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Detailed information on CNT30104901


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Oryza longistaminataOryza sativa99.8878.6594.431617forward
CNT30673126Oryza longistaminataSetaria viridis11.9844.3991.24194forward
CNT30373447Oryza longistaminataArabidopsis thaliana12.8534.1585.58208forward
CNT30487977Oryza longistaminataOlea europaea4.3226.9288.5770forward
CNT30504265Oryza longistaminataNicotiana attenuata8.5945.5784.89139forward
CNT30156599Oryza longistaminataPistacia vera11.825.3386.39191forward
CNT3096793Oryza longistaminataSolanum tuberosum10.3826.7984.52168forward
CNT30560106Oryza longistaminataActinidia chinensis11.9236.2884.97193forward
CNT30553799Oryza longistaminataOryza glaberrima28.3582.5598.69459forward
CNT30146219Oryza longistaminataMedicago truncatula10.1366.1385.37164forward
CNT30311950Oryza longistaminataCamelina sativa10.9924.6983.71178forward
CNT3014113Oryza longistaminataZea mays6.8623.7792.79111forward
CNT30204543Oryza longistaminataHelianthus annuus6.6148.8682.24107forward
CNT30479425Oryza longistaminataArabidopsis halleri11.1830.8987.85181forward
CNT30367748Oryza longistaminataSorghum bicolor6.4226.7491.35104forward
CNT30596276Oryza longistaminataOryza meridionalis28.9784.296.59469forward
CNT30120491Oryza longistaminataCitrus clementina9.0241.1387.67146forward
CNT30332036Oryza longistaminataDioscorea rotundata3.892088.8963forward
CNT30101764Oryza longistaminataOryza rufipogon21.4964.68100348forward
CNT30576402Oryza longistaminataOryza barthii18.7240.2498.35303forward
CNT30496859Oryza longistaminataDigitaria exilis16.7444.2182.29271forward
CNT30594303Oryza longistaminataEragrostis curvula11.5529.1795.19187forward
CNT30175579Oryza longistaminataVigna angularis9.6426.9487.82156forward

Expression of CNT30104901

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKPQQILCSGRRKINITIKRNQASDVVSHD*

>peptide 2 (41 aa)
MQTNVHAMLNNKWPASQDSMYGSSSPNQTTLCRSKPLVQSA*

>peptide 3 (38 aa)
MNLFHRMIVLDRIIEHIIQITDHLYATGHMRHHETIRM*

>peptide 4 (61 aa)
MQPAQCIQRSAQESTKWNMRLSRPTLIKLTQHGPLVLQYCNIVLCPQNTILRPRNQSCPES*

Sequence

>CNT30104901
TGATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAACATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCAC
CTAACCCGATCGCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTAGGCCCTGACAGTTTTAGTTCACT
TCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACGTCAGCCTC
CTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCCGGGAAGTCAATGGTCCCATTGCCATCAGCATCAACCTCG
TTGATCATGTCCTGCAGCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGGTTCCAAGCTCCTTAGTAGTGATGCAACCTGCACAATGTATTC
AGAGATCAGCACAAGAGAGTACTAAATGGAACATGCGATTATCTCGTCCAACGCTCATAAAATTAACACAACATGGTCCTTTAGTGCTGCAATATTGTAA
TATTGTTTTATGCCCACAAAATACAATTTTAAGACCAAGAAATCAAAGCTGTCCTGAGTCCTGACAACAGAGTACATACACATCACAAGACCACCATCAG
TATCGTTATCACTTTCAGGAAATTTATGAACCTATTTCACAGAATGATAGTGCTGGATAGAATCATTGAACATATTATACAAATCACAGACCACCTATAT
GCTACAGGCCACATGAGACATCATGAAACAATAAGAATGTGATGCCTAAGTTCAACAGCCACTTAGGTAGCTTCCCGCCACCGCAGTAACATACAATCAC
ATACAATCAACTCATAAGCCTACATCAATAATTATTGTGTACACTAGATGTGGCACAAATCACAAACCAGCCCAGCTTGCATCTAAGACTTGCTAAAAAT
GAACTTCTCTTGCGCAAGAGCAAGAAATAACTAGTCAACAGGCCGGCGAAGAATTCAAGACATAGGTTTTAATAAACTATGTCCAGAAGAAAAGAGCACT
TTACATCTTAAATGTTGGTCTAAGAACTGCATTGATGTCTCTATTTCTTCCTTTGTGTAATGATGGTACACTAACATACTAGTATCACCCAACACTTCTT
TCAACACTACTGTTGTACAAGCAACAGTTCTTTCAACACTGTTGTACAAAGACAAATATCAACTGAAACACTAAATTTTCCCTAAACAAACTAGCCATTG
GCATCATACTGCTATTGCAAAACCAGATTCACAACCTCGATTCTACATAAAGTTTGGCAAATTCCACACCCAAATTTCAAAACCACACAGAATCACTGAC
CTAGCTGCACATAGAGATTTTCAAGTACTGATGCTAGATCATGCAAACCAATGTTCACGCCATGCTAAATAACAAATGGCCTGCTTCACAAGACTCGATG
TACGGATCCTCCTCTCCAAATCAAACAACCCTCTGCCGCTCTAAGCCCCTAGTTCAAAGCGCCTAGTTGCTGATCCCAAATCGTCCCTTCCTCAAAAGCA
CGGCAAAAATCCTAAACAC