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Detailed information on CNT30101815


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 1e-51

BLAST vs NONCODE:
NONSLYT003545, E-value = 4e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Oryza rufipogonSetaria viridis37.6438.4993.14204forward
CNT30545709Oryza rufipogonIpomoea triloba35.2420.4583.77191forward
CNT30373447Oryza rufipogonArabidopsis thaliana29.5226.2786.25160forward
CNT30617519Oryza rufipogonSesamum indicum40.9611.0585.59222forward
CNT30379145Oryza rufipogonManihot esculenta28.0433.7883.55152forward
CNT30504265Oryza rufipogonNicotiana attenuata16.9730.1686.9692forward
CNT30156599Oryza rufipogonPistacia vera39.4828.3888.32214forward
CNT3097357Oryza rufipogonSolanum tuberosum35.799.784.02194forward
CNT30560106Oryza rufipogonActinidia chinensis40.5941.3585.45220forward
CNT3085845Oryza rufipogonVigna radiata42.9917.7988.84233forward
CNT30147448Oryza rufipogonMedicago truncatula20.1121.4188.07109forward
CNT30311950Oryza rufipogonCamelina sativa39.1129.485.38212forward
CNT30231884Oryza rufipogonAnanas comosus42.6221.9287.45231forward
CNT30216184Oryza rufipogonKalanchoe fedtschenkoi20.8523.2584.96113forward
CNT30625935Oryza rufipogonDaucus carota20.117.6782.57109forward
CNT30346128Oryza rufipogonEragrostis tef34.6931.3993.62188forward
CNT30479425Oryza rufipogonArabidopsis halleri41.8838.7485.46227forward
CNT30621990Oryza rufipogonCajanus cajan31.1825.5387.57169forward
CNT30120491Oryza rufipogonCitrus clementina39.1159.7287.26212forward
CNT3037982Oryza rufipogonCucumis melo25.8325.3685140forward
CNT30332036Oryza rufipogonDioscorea rotundata14.7625.487.580forward
CNT30116198Oryza rufipogonOryza nivara20.488.4186.49111forward
CNT30594303Oryza rufipogonEragrostis curvula42.9936.3593.99233forward
CNT30175579Oryza rufipogonVigna angularis41.739.0388.94226forward
CNT3039763Oryza rufipogonMarchantia polymorpha36.932.6380.5200forward

Expression of CNT30101815

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GTRQCISAQRSKKNDETPTNPMLRQAQDKHHNQKKPGI*

>peptide 2 (68 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFIFFAIRFRNSGKSMVPLPSASTSLIMSCSSASVGF*

>peptide 3 (44 aa)
EPGNAYQHNDPRKMMKPQQILCSGRRKINITIKRNQASDVVSHD*

Sequence

>CNT30101815
AGGAACCAGGCAATGCATATCAGCACAACGATCCAAGAAAAATGATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAACATCACAATCAA
AAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCACCTAACCCGATCGCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACAT
CACAAAGTACAGCTTTGTAGGCCCTGACAGTTTTAGTTCACTTCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAA
CTCCTCGTAGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTTGTCAAACACACGGAAGGCCTCCTTGAGCTCCTCCTCA
GAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCCGGGAAGTCAATGGTCCCATTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCA
GCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGG