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Detailed information on CNT30378266


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DH96|CALM4_ARATH, E-value = 3e-49

BLAST vs NONCODE:
NONBRAT001381, E-value = 2e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534974Arabidopsis thalianaEucalyptus grandis19.0626.7586.1565forward
CNT30156599Arabidopsis thalianaPistacia vera28.741384.6998forward
CNT3096793Arabidopsis thalianaSolanum tuberosum36.6619.9484.8125forward
CNT30387589Arabidopsis thalianaTriticum turgidum25.224.1387.2186forward
CNT30234913Arabidopsis thalianaBrassica oleracea19.0623.9993.8565reverse complement
CNT30146219Arabidopsis thalianaMedicago truncatula41.0656.4584.29140forward
CNT30311950Arabidopsis thalianaCamelina sativa45.4521.595.48155forward
CNT301326Arabidopsis thalianaZea mays23.4623.329080forward
CNT30231884Arabidopsis thalianaAnanas comosus63.9320.6881.65218forward
CNT30625935Arabidopsis thalianaDaucus carota23.755.788.8981forward
CNT30346128Arabidopsis thalianaEragrostis tef27.8615.8691.5895forward
CNT30479425Arabidopsis thalianaArabidopsis halleri42.8224.9191.1146forward
CNT30149356Arabidopsis thalianaBrachypodium distachyon21.73.1786.4974forward
CNT30576402Arabidopsis thalianaOryza barthii30.7913.9488.57105forward
CNT30116198Arabidopsis thalianaOryza nivara35.489.1785.95121forward
CNT30175579Arabidopsis thalianaVigna angularis37.5422.1185.16128forward
CNT30727077Arabidopsis thalianaLupinus angustifolius22.8720.2684.6278reverse complement

Expression of CNT30378266

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VSVFHLLSHQVQELGEVDSAVSICINLVDHVLELSLCWVLS*

>peptide 2 (54 aa)
ESVSFIFLAIRFRNSGKSIVPFPSASTSLIMSWSSASVGFCPSERITVPSSFVI*

Sequence

>CNT30378266
GAGTCAGTGTCTTTCATCTTCTTAGCCATCAGGTTCAGGAACTCGGGGAAGTCGATAGTGCCGTTTCCATCTGCATCAACCTCGTTGATCATGTCTTGGA
GCTCAGCCTCTGTTGGGTTTTGTCCTAGTGAACGCATAACTGTTCCCAGCTCTTTTGTAATCTAACCATCGCCATCTTTGTCGAAGAGGCTAAAAGCTTC
CTTGAATTCGGAGATCTGTTCGTCAGTGAGTTGATCCGCCATAGCTTCTTCGAGAAATCGTCTTTCTTCTCTTCCTTTGTCTTTACTTAATGAGTTTTTT
TTTTTTTTGGATTCAGAGTCGTCTCTCTTTGAAAATGATGC