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Detailed information on CNT3085845


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 9e-48

BLAST vs NONCODE:
NONSLYT003545, E-value = 2e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Vigna radiataSetaria viridis15.6538.6887.32205forward
CNT30545709Vigna radiataIpomoea triloba14.8120.7786.6194forward
CNT30373447Vigna radiataArabidopsis thaliana11.7625.2983.77154forward
CNT30379145Vigna radiataManihot esculenta11.9134.6783.97156forward
CNT30630273Vigna radiataVigna unguiculata5.522.5786.1172forward
CNT30504265Vigna radiataNicotiana attenuata8.0934.7586.79106forward
CNT30156599Vigna radiataPistacia vera17.9431.1785.53235forward
CNT3096793Vigna radiataSolanum tuberosum18.3238.2882.08240forward
CNT30125031Vigna radiataPhyscomitrium patens16.7930.7381.82220forward
CNT30560106Vigna radiataActinidia chinensis16.5640.7985.71217forward
CNT30553673Vigna radiataOryza glaberrima17.9430.889.36235forward
CNT30147448Vigna radiataMedicago truncatula11.5329.6789.4151forward
CNT30311950Vigna radiataCamelina sativa17.3331.4882.38227forward
CNT3014113Vigna radiataZea mays9.2425.9188.43121forward
CNT30231884Vigna radiataAnanas comosus16.1120.0288.63211forward
CNT30216184Vigna radiataKalanchoe fedtschenkoi9.1624.6983.33120forward
CNT30204543Vigna radiataHelianthus annuus6.3437.985.5483forward
CNT30346128Vigna radiataEragrostis tef14.4331.5587.3189forward
CNT30479425Vigna radiataArabidopsis halleri17.3338.7483.7227forward
CNT30367748Vigna radiataSorghum bicolor9.2431.1188.43121forward
CNT30621990Vigna radiataCajanus cajan12.3724.4790.12162forward
CNT30596276Vigna radiataOryza meridionalis12.930.3487.57169forward
CNT30120491Vigna radiataCitrus clementina17.1863.3886.67225forward
CNT3037982Vigna radiataCucumis melo10.4624.8286.86137forward
CNT30332036Vigna radiataDioscorea rotundata6.0325.0884.8179forward
CNT30101815Vigna radiataOryza rufipogon17.7942.9988.84233forward
CNT30576402Vigna radiataOryza barthii15.6527.2289.76205forward
CNT30594303Vigna radiataEragrostis curvula18.3237.4487.5240forward
CNT30175579Vigna radiataVigna angularis44.35100.3598.45581forward

Expression of CNT3085845

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MILTLLLLSQPVWVWIWIWIFFCYKNASF*

>peptide 2 (31 aa)
HPIIYTSLTYFSVFSFFTTSHNRLIFISHFS*

>peptide 3 (37 aa)
MRNETKYSFVLVHWLCIALHHCWSEVEKCKMVTNNHV*

>peptide 4 (39 aa)
MRFRNSGKSMVPFPSASTSFIMSCSSASVGFCPSDRITVP

>peptide 5 (41 aa)
MVKLLKQGTQHTSRSRSRNTNEQYQLNKSKQTRPTKTNDPK*

>peptide 6 (44 aa)
MKFVLMKIEFSSKLICPVLFLFMCFSNFFVMVGWSSHGGALQQR*

>peptide 7 (69 aa)
MAELCSRDETVLILVKHTKGLLQLLLRISVFHLPRHEVQEFWEINGTIPISINLIYHVLQLSLSRVLPK*

>peptide 8 (70 aa)
MSHEQPFNLTINHVKSFIFLSLLLLSLFCSRTCVCLGSQNNVCMYFFDVCILCTLVLTFPLSERKGRNII*

>peptide 9 (43 aa)
MKQNTVLFWFTGFALHCIIVGVRSRNARWSQTIMYSIKMVLTV*

>peptide 10 (51 aa)
MTPNEVCPNENRILIKTYLPCPFSVHVLFKFFCYGWLVITWRSSAAEMKPF*

Sequence

>CNT3085845
CACCCCATCATATACACATCCCTTACTTATTTCTCTGTCTTTTCTTTTTTTACCACATCACATAACCGTTTGATATTCATCTCTCACTTCTCTTGAGTCT
CTCCACCCAAGATGTGAGCCAAACCAAGTTAAAAACAGGAAGATGAAGTCTTCGAGCAAGGTGGTTGGTTTGTGTGTAGTCTTCAATTCAAAAGCAGCAG
TTGTTCCCACCACATAACATTTGGCCCAATGATTTTGACTTTGCTTTTGCTTTCACAACCAGTTTGGGTTTGGATTTGGATTTGGATTTTCTTCTGCTAC
AAGAATGCTTCATTCTGAAATAAATTAATAATCTCTTGCCATCAGTAAGGGAAAATCTTTCCTCCTCAGGTTGAACTGCGCGGCATCAATGTCCCACGAA
CAACCATTTAATCTAACAATAAATCATGTAAAATCTTTCATTTTCTTATCATTATTGTTACTGTCATTGTTTTGCTCAAGAACGTGTGTTTGTTTGGGTT
CTCAAAACAACGTGTGTATGTATTTCTTTGACGTTTGCATTTTATGTACATTAGTTTTGACGTTTCCATTATCAGAAAGAAAAGGGCGAAACATCATCTG
ATAAAGATGATATTTTTCACATGAGAAATGAAACAAAATACAGTTTTGTTTTGGTTCACTGGCTTTGCATTGCATTGCATCATTGTTGGAGTGAGGTCGA
GAAATGCAAGATGGTCACAAACAATCATGTATAGCATAAAGATGGTATTAACAGTATAAGTCACTCACTCACATGTAAAAGCACAAATTGCAACCAATTG
TTCGAGGTTCATAGTAGTAACCCAAAAAAGATGACAAGTGAAGTACAAATGCATGGTGAAGCTACTAAAACAAGGGACACAGCACACAAGTAGAAGTAGA
AGTAGAAACACTAATGAGCAATACCAATTAAATAAGAGCAAACAAACCCGACCAACAAAAACTAATGACCCCAAATGAAGTTTGTCCTAATGAAAATAGA
ATTCTCATCAAAACTTATCTGCCCTGTCCTTTTTCTGTTCATGTGCTTTTCAAATTTTTTTGTTATGGTTGGTTGGTCATCACATGGCGGAGCTCTGCAG
CAGAGATGAAACCGTTCTGATCCTTGTCAAACACACGAAAGGCCTCCTTCAGCTCCTCCTCCGAATCAGTGTCTTTCATCTTCCTCGCCATGAGGTTCAG
GAATTCTGGGAAATCAATGGTACCATTCCCATCAGCATCAACCTCATTTATCATGTCCTGCAGCTCAGCCTCAGTCGGGTTTTGCCCAAGTGACCGCATC
ACGGTCCCAA