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Detailed information on CNT30576402


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 2e-70

BLAST vs NONCODE:
NONPOPT000052, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Oryza barthiiOryza sativa39.0414.399.66294forward
CNT30672655Oryza barthiiSetaria viridis45.9565.2892.49346forward
CNT30545709Oryza barthiiIpomoea triloba41.0433.0883.17309forward
CNT30378266Oryza barthiiArabidopsis thaliana13.9430.7988.57105forward
CNT30617519Oryza barthiiSesamum indicum42.2315.8384.91318forward
CNT30379145Oryza barthiiManihot esculenta36.3960.8984.67274forward
CNT30487977Oryza barthiiOlea europaea14.2141.1586.92107forward
CNT30504265Oryza barthiiNicotiana attenuata15.5438.3684.62117forward
CNT30156599Oryza barthiiPistacia vera41.9741.9185.76316forward
CNT3097357Oryza barthiiSolanum tuberosum39.9715.0583.72301forward
CNT30560106Oryza barthiiActinidia chinensis42.560.1585.94320forward
CNT30586817Oryza barthiiMusa acuminata25.7619.4486.08194forward
CNT3085845Oryza barthiiVigna radiata27.2215.6589.76205forward
CNT30234205Oryza barthiiBrassica oleracea25.7637.3889.18194forward
CNT30553743Oryza barthiiOryza glaberrima98.5499.87100742forward
CNT30146219Oryza barthiiMedicago truncatula14.2143.1586.92107forward
CNT30248464Oryza barthiiAvena sativa25.932.0289.74195forward
CNT30311950Oryza barthiiCamelina sativa42.7644.6685.09322forward
CNT3073928Oryza barthiiBrassica juncea25.7644.2989.69194forward
CNT3011614Oryza barthiiZea mays26.9627.0393.1203forward
CNT30607166Oryza barthiiGossypium raimondii22.9747.486.71173forward
CNT30231884Oryza barthiiAnanas comosus38.1127.2387.8287forward
CNT30216184Oryza barthiiKalanchoe fedtschenkoi25.3739.385.86191forward
CNT30346128Oryza barthiiEragrostis tef42.7653.7688.51322forward
CNT30479425Oryza barthiiArabidopsis halleri42.7654.9583.85322forward
CNT30621990Oryza barthiiCajanus cajan22.4425.5387.57169forward
CNT30596276Oryza barthiiOryza meridionalis53.5272.3594.54403forward
CNT30104901Oryza barthiiOryza longistaminata40.2418.7298.35303forward
CNT3026117Oryza barthiiPopulus trichocarpa16.3328.6781.3123forward
CNT30120491Oryza barthiiCitrus clementina28.5560.5686.51215forward
CNT3037982Oryza barthiiCucumis melo34.446.9285.71259forward
CNT30332036Oryza barthiiDioscorea rotundata24.8359.3786.63187forward
CNT30101764Oryza barthiiOryza rufipogon52.5973.6197.98396forward
CNT30497675Oryza barthiiDigitaria exilis25.932.7291.79195forward
CNT30116198Oryza barthiiOryza nivara28.5516.2990.7215forward
CNT30594303Oryza barthiiEragrostis curvula42.7650.2392.55322forward
CNT30175579Oryza barthiiVigna angularis27.7636.189.95209forward
CNT30335796Oryza barthiiCynara cardunculus22.4442.4685.8169forward

Expression of CNT30576402

Peptides detected in this lncRNA

>peptide 1 (65 aa)
RGKAATIQFSTQQGSKDDDRKEPGNAYLHNDPRKMMKPQQILCSGRRKISITIKRNQASDVVSHD*

>peptide 2 (35 aa)
CGGRLQPFNSARNREVKMMIERNQAMHICTTIQEK*

>peptide 3 (96 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFIFFAIRFRNSGKSMVPLPSASTSLIMSCSSASVGGVEASRRFRERRRGRKGNEWRGGGGEEMAV

Sequence

>CNT30576402
TGCGGGGGAAGGCTGCAACCATTCAATTCAGCACGCAACAGGGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAAG
AAAAATGATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAG
ACCACCTAACCCGATCCCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTTT
AGTTCACTTCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACG
TCAGCCTCACGGATCATCTCGTCAACTTCCTCGTCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCT
GGTCCTTGTCAAACACACGGAAGGCCTCCTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCTGGGAAGTCAAT
GGTCCCATTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTCCGCCTCAGTTGGGGGTGTGGAAGCTTCGAGAAGGTTCCGCGAGAGGAGGAGA
GGAAGGAAGGGGAACGAGTGGCGAGGTGGGGGTGGAGAAGAGATGGCTGTGGC