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Detailed information on CNT30496859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S744|CML9_ARATH, E-value = 7e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672861Digitaria exilisSetaria viridis50.952.5392.95312forward
CNT30530065Digitaria exilisEucalyptus grandis12.422.4285.5376forward
CNT30545709Digitaria exilisIpomoea triloba27.4117.9983.93168forward
CNT30487677Digitaria exilisOlea europaea23.1639.1285.21142forward
CNT30156595Digitaria exilisPistacia vera29.8523.1984.7183forward
CNT30311950Digitaria exilisCamelina sativa28.3824.1387.36174forward
CNT3073928Digitaria exilisBrassica juncea27.939.0490.64171forward
CNT3011614Digitaria exilisZea mays64.652.7389.9396forward
CNT30231884Digitaria exilisAnanas comosus22.6813.1989.21139forward
CNT30346128Digitaria exilisEragrostis tef70.9672.6282.53435forward
CNT30479425Digitaria exilisArabidopsis halleri28.3829.6982.76174forward
CNT30367843Digitaria exilisSorghum bicolor71.1361.4188.07436forward
CNT30104901Digitaria exilisOryza longistaminata44.2116.7482.29271forward
CNT30120491Digitaria exilisCitrus clementina13.3823.186.5982forward
CNT30149356Digitaria exilisBrachypodium distachyon30.187.9393.51185forward
CNT30101764Digitaria exilisOryza rufipogon44.2150.3782.29271forward
CNT30594303Digitaria exilisEragrostis curvula63.1360.3787.6387forward

Expression of CNT30496859

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTTPNPTTTRHYHLHDTDTYSNGHGKVQLVSLIIQFASDRLISWGPLLT*

>peptide 2 (39 aa)
MTWRSSAAEMKPFWSLSKTRKERRKGVLVLGSLVGWPAMM

Sequence

>CNT30496859
CTCCAGACTGATTGACAATGCGATAGAATAAGCCAAGAAACTACATCCCTCATATAACAATTAGCATTAGCAGAAATCCAGACTGATTGACAATGCGATA
GAAGACTTGTGCAAATACCAACATCCACGAAAATATGAACTTCAACAAATCCTAAAAGCTCCAACAGGCGCAATAATGCAAGATAAACATCACAATCAAA
AGAAACCAGGTATCTGATGTCACGTTCCCATGACTACACCTAACCCGACCACTACTCGACATTACCACCTGCATGATACTGATACGTACTCAAATGGACA
TGGCAAAGTACAGCTTGTGAGCCTGATAATTCAGTTTGCTTCGGACAGACTTATTTCATGGGGACCGCTCCTCACTTAGCCATCATGACCTTGACGAACT
CCTCGTAGTTGATCTGGCCGTCGCCGTCAACGTCGGCCTCACGGATCATCTCATCAACTTCCTCATCGGTCAGCTTCTCACCGAGGTTGGTCATGACATG
GCGGAGCTCAGCGGCTGAGATGAAACCGTTCTGGTCCTTATCGAAGACGCGGAAGGAGAGAAGGAAGGGGGTGCTCGTGCTCGGGTCACTCGTTGGTTGG
CCTGCGATGATGG