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Detailed information on CNT30625935


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673126Daucus carotaSetaria viridis10.3433.6482.99147forward
CNT30534974Daucus carotaEucalyptus grandis5.2130.4590.5474forward
CNT30378266Daucus carotaArabidopsis thaliana5.723.7588.8981forward
CNT30504265Daucus carotaNicotiana attenuata9.8545.987.14140forward
CNT3096793Daucus carotaSolanum tuberosum9.2921.0586.36132forward
CNT30560106Daucus carotaActinidia chinensis10.4227.8286.49148forward
CNT30146219Daucus carotaMedicago truncatula9.2953.2384.85132forward
CNT3014113Daucus carotaZea mays7.1121.6384.16101forward
CNT30204543Daucus carotaHelianthus annuus7.5348.8684.11107forward
CNT30479425Daucus carotaArabidopsis halleri10.224.7481.38145forward
CNT30367748Daucus carotaSorghum bicolor7.1125.9685.15101forward
CNT30596276Daucus carotaOryza meridionalis9.0823.1682.17129forward
CNT30120491Daucus carotaCitrus clementina8.4433.887.5120forward
CNT30101815Daucus carotaOryza rufipogon7.6720.1182.57109forward
CNT30594303Daucus carotaEragrostis curvula10.222.6283.45145forward

Expression of CNT30625935

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCTNHKTNLIRQTTHPELKDVALKHDLNH*

>peptide 2 (36 aa)
MKRREMIEKLTIAVLVKQAESFLELGDLIVGELIGH*

>peptide 3 (47 aa)
MYNRTFLRHHNLQQEIVIISTNKGTINTQRTGVLPSTARQKCQYRSI*

>peptide 4 (60 aa)
AIRFKNSGKSIVPLPSASTSFIISCSSASVGFCPSDLMTVPSSLVVMQPTYFSNEVSVYI*

Sequence

>CNT30625935
GGCCATAAGGTTTAAGAACTCGGGAAAGTCAATAGTTCCATTACCATCAGCATCCACTTCATTTATCATATCCTGTAGTTCAGCCTCAGTAGGGTTCTGT
CCAAGCGACCTCATGACAGTCCCAAGCTCCTTGGTAGTGATGCAACCTACATATTTTTCAAATGAAGTTTCAGTCTATATATGAGGAACTGAAAAGATAT
GTTAGGATTTTTTGAGGACAGCAAGGGAGGTAAAACACAACTAGGTCAAGCAAAATAGATGAACTCGCAAGCAAACCTAAAAGAATGATAGTAATGCCTT
TCTTAATTCGCAAACATCCAATTGACTAATAAACTATACACGCATATAGCATAACGACAAGGTTAGTCTAGATTCCTATCCCATAAAAGAACTTTGACAC
GCAAAGTAAACAACTAAGTTTCAATTATTTAATACACTTATGTATAACAGAACTTTCTTACGTCACCATAATCTTCAGCAGGAAATAGTTATCATTTCAA
CTAATAAAGGCACAATCAATACACAGAGAACAGGAGTTCTACCGTCTACGGCCCGCCAAAAATGTCAATATAGGTCTATTTAAACCAGATGAGCAAGGTT
TGTGGCATATAATAAGCGACATCACAAAATTATCACGATAATCAGCTTGTCCAGATCAACTTAACAACAAAGGCAGTTGTATATAAACAACTCATTGTCA
AAAAAAACATAAGACCTCTATATAAAATGGATGCTATTACATTCAAAAGAAATTATTAACCTAATAACATAAGATCTCTATGTGTACAAATCACAAAACA
AATCTTATCCGCCAAACCACACACCCCGAGCTAAAAGATGTAGCTCTAAAACACGATCTAAATCACTAAAGCTCGCAAACAATAATCATAATCACGTAAA
TCAAAAAATTATCCAACTAAAAACACCGAAACGAATCAAAATAAGCCTAAATCCAGCACAAAAATTAGCAAAAAAACGTACAAAATCCACAAAATTGACA
GATACACAAATAAACATATATACATCATATATAAGCCTACATCTATTACTAAAATCCACAAAAATCATATGAAATCCACAAAATGGCATATACATACATA
AACATATATAAAAATCACATATAAGCCTACATCGAGAACAAAATATCACAGAAAACAAGTGAAATCAAAGAAAAAACCAGATCTGAGCAATGAAAAGGCG
GGAAATGATAGAAAAGCTAACCATCGCCGTCCTTGTCAAACAGGCTGAAAGCTTCCTTGAACTCGGAGATCTGATCGTCGGTGAGTTGATCGGCCATTGA
CTCGGTTTAGTGAAAAAGAGAGGGTTTGATTAAGGAGATGGAATATACGTACAGAGTATATGTATGTATATGCTGAGACGGACAGGAGGAGAGGTAGCGT
TATATATCAGCGAAATGTGGG