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Detailed information on CNT3097357


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 3e-79

BLAST vs NONCODE:
NONPOPT000052, E-value = 6e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Solanum tuberosumSetaria viridis1660.3884.06320forward
CNT30534974Solanum tuberosumEucalyptus grandis3.730.4591.8974forward
CNT30545709Solanum tuberosumIpomoea triloba15.6533.5189.14313forward
CNT30373447Solanum tuberosumArabidopsis thaliana8.929.2382.58178forward
CNT30379145Solanum tuberosumManihot esculenta11.255084225forward
CNT30487677Solanum tuberosumOlea europaea6.5536.0986.26131forward
CNT30504265Solanum tuberosumNicotiana attenuata6.5542.9592.37131forward
CNT30156599Solanum tuberosumPistacia vera18.849.8786.17376forward
CNT30125031Solanum tuberosumPhyscomitrium patens12.2534.2280.41245forward
CNT30560106Solanum tuberosumActinidia chinensis18.8570.8687377forward
CNT30234205Solanum tuberosumBrassica oleracea7.5529.0984.77151forward
CNT30553673Solanum tuberosumOryza glaberrima16.2542.683.38325forward
CNT30146219Solanum tuberosumMedicago truncatula8.0564.9284.47161forward
CNT30248464Solanum tuberosumAvena sativa9.731.8684.54194forward
CNT30311950Solanum tuberosumCamelina sativa16.445.4984.45328forward
CNT3073928Solanum tuberosumBrassica juncea7.5534.4786.09151forward
CNT3014113Solanum tuberosumZea mays729.9883.57140forward
CNT30607166Solanum tuberosumGossypium raimondii8.5546.8585.38171forward
CNT30231884Solanum tuberosumAnanas comosus16.2530.8381.85325forward
CNT30216184Solanum tuberosumKalanchoe fedtschenkoi9.9540.9583.92199forward
CNT30346128Solanum tuberosumEragrostis tef15.852.7580.7316forward
CNT30479425Solanum tuberosumArabidopsis halleri18.663.4882.26372forward
CNT30367748Solanum tuberosumSorghum bicolor11.659.6482.76232forward
CNT30621990Solanum tuberosumCajanus cajan8.425.3883.33168forward
CNT30596276Solanum tuberosumOryza meridionalis8.1529.2685.28163forward
CNT3026117Solanum tuberosumPopulus trichocarpa5.7526.8185.22115forward
CNT30120491Solanum tuberosumCitrus clementina12.872.1187.89256forward
CNT3037982Solanum tuberosumCucumis melo1347.181.15260forward
CNT30332036Solanum tuberosumDioscorea rotundata9.157.7885.71182forward
CNT30148143Solanum tuberosumBrachypodium distachyon9.837.9883.16196forward
CNT30101815Solanum tuberosumOryza rufipogon9.735.7984.02194forward
CNT30576402Solanum tuberosumOryza barthii15.0539.9783.72301forward
CNT30497675Solanum tuberosumDigitaria exilis8.4528.3683.43169forward
CNT30594303Solanum tuberosumEragrostis curvula18.658.0384.95372forward
CNT30175579Solanum tuberosumVigna angularis10.5536.4483.89211forward
CNT30335796Solanum tuberosumCynara cardunculus9.3546.9887.7187forward
CNT3039763Solanum tuberosumMarchantia polymorpha9.5531.1680.1191forward

Expression of CNT3097357

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSQKIRNTKKKSPIFQHITTLLTLLSTFNKYLLTLP*

>peptide 2 (92 aa)
MRFRNSGKSMVPLPSASTSFIMSWSSASVGFCPNDLITVPSSLVVMQPIYKASRLAYCTKTNKPHSVTLTSVSYCPQKKTENTPLFNSCPRK*

>peptide 3 (51 aa)
MVELLGHHDLNKLLIVDLSITINICFPNHLIDFFISKLLSKVSHHMTKLSS*

Sequence

>CNT3097357
TTTGCGATGAGGAAATTACCCTCATAAAATTGCATTCATCAACTAAGAGGATCAAAGAAAGTACATAAACTTCAAGAAAATAAGTAGAGATTACACCACC
CTTACAATAAAACATTACATTCAATGAAGGTTCAATACATCGAGATGGTAAGACTTACATTATACTAGATAAGATCCTATCCAATGAATTATTTTTGGCT
TTTTTTTCACATTTTTGACAAGTCTAAACTTCAAATGTAACAAGAGGATGGTGGAATTACTTGGCCATCATGACCTTAACAAACTCCTCATAGTTGATTT
GTCCATCACCATCAACATCTGCTTCCCTAATCATCTCATCGACTTCTTCATCAGTAAGCTTCTCTCCAAGGTTAGTCATCACATGACGAAGCTCAGCAGC
TGAGATGAAGCCATTTTGATCCTTGTCGAAAACTCTGAATGCCTCTTTCAACTCCTCCTCAGAGTCAGTATCCTTCATCTTCCTGGCCATGAGGTTTAGA
AACTCTGGGAAGTCGATGGTTCCATTACCATCTGCATCCACCTCGTTTATCATGTCCTGGAGTTCAGCTTCAGTAGGGTTCTGTCCCAACGACCTCATCA
CAGTCCCAAGCTCCTTAGTCGTGATGCAACCTATATACAAAGCTTCACGATTAGCTTACTGCACGAAAACTAACAAACCACACTCAGTGACCCTAACATC
AGTAAGCTACTGTCCACAGAAGAAAACAGAAAATACACCACTTTTCAACTCATGTCCCAGAAAATAAGGAACACAAAAAAAAAATCACCAATTTTTCAAC
ACATAACAACATTACTAACACTGTTATCAACATTTAATAAATATCTTTTAACACTTCCCTAATAACTAATGAAAAAAATCATTCATCTAATTGTTCGTCC
CAATCAATGAGTTCAGACAAAAGCTACTACAGATTTAGAAAAAAGGGAGGATTTTGGTTAGCATTTAACACAAACTGAAGCCAGTAATAAAGGCCAAATT
TTTCATCAAATTAAATTATCACTTCTCAATCCATGTATAATCCAATTTACAACACAGCTTCTCTGAAATAGCTCTTAATTTCTTCTTTTAAGTTCTTTCA
TTATCGTGGTCTAGTTCAGCTTGCACGCACCTCTACTAATTCCACGGCCTCCGACACACACAAGTCCCACTAATTCCACTACCTCCCACCAACACGAGTA
CGGAGTAACTCCTTTTTTTTTATAACCGTCATATCCAAGCCAACTTACACACACCTAGACTAATTCCATAAAATACCTCTCAACTCCCACCACCACCAGC
AACAAGTACCAAGTAATTCTATCCACCAAAGTTAAGACAGACGGAAGGAAATCAATTGTATTTTTGTCTCTGTTGTGATTTGAACCTGAGGCCTCACGGT
TCTCTCAACCACTTCAGGTAGCTCTATAAACCAAGCACCTTCTTAATACAAGACTTCATGGTTCTCAACTCAACTAACCGGCCAAATCTTGTATGCGGAT
ATCAAGTAACTCTATTCACCAAAAACGAATAAAAATCACTTGTTTTTCAACATGAGATCTCATGATACCGAAAAAACAGTAATTCACCAACGTAACATCA
AACTACATAGCTTCCATATTCTCTAATTCATTTTTAACGTTTCAACAAGCTAGAAAATCTATGTTTTCCTCTATTTACTAACTGAATATTCTCATATATC
AACTTGTCACCAAAAAAATCAACTAGTTCATTCAAATTTCAAATCAAACGTCAGATCTGCAACAAAACAGATTCCACATACACCTATAAGCATCAAAAAC
ACAAAACATATACACATTTACAGAGAAAAAAAAGGCGCCAAACCATCTCCGTCCTTGTCGAACAAGCTGAAAGCCTCTTTGAACTCAGAGATCTGGTCAT
CAGTAAGCTGATCCGCCATTTTTCTTCTTCTAGTAATCACAGAGAAGATGATTCTAGAATTTCACACAAATTTTTTGAAAAATTTTCAGCTCTGTATGGA