Detailed information on CNT30553673


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 7e-78

BLAST vs NONCODE:
NONSLYT003545, E-value = 5e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373447Oryza glaberrimaArabidopsis thaliana21.126.4485.71161forward
CNT30617519Oryza glaberrimaSesamum indicum44.0416.7284.82336forward
CNT30504265Oryza glaberrimaNicotiana attenuata12.0630.1688.0492forward
CNT30156599Oryza glaberrimaPistacia vera42.643.185.54325forward
CNT3097357Oryza glaberrimaSolanum tuberosum42.616.2583.38325forward
CNT30560106Oryza glaberrimaActinidia chinensis45.7465.685.67349forward
CNT3085845Oryza glaberrimaVigna radiata30.817.9489.36235forward
CNT30147448Oryza glaberrimaMedicago truncatula16.1224.1786.99123forward
CNT30311950Oryza glaberrimaCamelina sativa42.8645.3585.32327forward
CNT30613842Oryza glaberrimaArabis alpina13.2423.7683.17101reverse complement
CNT30231884Oryza glaberrimaAnanas comosus40.6329.4187.42310forward
CNT30479425Oryza glaberrimaArabidopsis halleri4659.984.05351forward
CNT30120491Oryza glaberrimaCitrus clementina29.7563.9486.78227forward
CNT30594303Oryza glaberrimaEragrostis curvula46.5355.3892.96355forward
CNT30175579Oryza glaberrimaVigna angularis29.7539.2189.43227forward
CNT3039763Oryza glaberrimaMarchantia polymorpha26.3432.7980.1201forward

Expression of CNT30553673

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KAATIQFSTQQGSKDDDRKEPGNAYLHNDPRKMMKPQQILCSGRRKISITIKRNQASDVVSHD*

>peptide 2 (68 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFIFFAIRFRNSGKSMVPLPSASTSLIMSCSSASVGF*

>peptide 3 (32 aa)
RLQPFNSARNREVKMMIERNQAMHICTTIQEK*

Sequence

>CNT30553673
GAAGGCTGCAACCATTCAATTCAGCACGCAACAGGGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAAGAAAAATG
ATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCACCT
AACCCGATCCCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTTTAGTTCAC
TTCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACGTCAGCCT
CACGGATCATCTCGTCAACTTCCTCGTCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTT
GTCAAACACACGGAAGGCCTCCTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCTGGGAAGTCAATGGTCCCA
TTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGGTTCCGCGAGAGGAGGAGAGGA
AGGAAGGGGAACGAGTGGCGAGGTGGGGGTGGAGAAGAGATGGCTGTGGCTGGGCCTTTATAG