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Detailed information on CNT30147448


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673126Medicago truncatulaSetaria viridis37.1343.2584.13189forward
CNT30630273Medicago truncatulaVigna unguiculata35.9557.3787.43183forward
CNT30125031Medicago truncatulaPhyscomitrium patens33.423.7483.53170forward
CNT30560106Medicago truncatulaActinidia chinensis35.3633.8385180forward
CNT3085845Medicago truncatulaVigna radiata29.6711.5389.4151forward
CNT30553673Medicago truncatulaOryza glaberrima24.1716.1286.99123forward
CNT30231884Medicago truncatulaAnanas comosus26.921389.05137forward
CNT30204543Medicago truncatulaHelianthus annuus21.4149.7787.16109forward
CNT30346128Medicago truncatulaEragrostis tef22.9919.5385.47117forward
CNT30479425Medicago truncatulaArabidopsis halleri25.7422.3585.5131forward
CNT30621990Medicago truncatulaCajanus cajan58.7445.1783.28299forward
CNT30596276Medicago truncatulaOryza meridionalis23.9721.986.89122forward
CNT30120491Medicago truncatulaCitrus clementina29.8642.8286.18152forward
CNT30101815Medicago truncatulaOryza rufipogon21.4120.1188.07109forward
CNT30594303Medicago truncatulaEragrostis curvula35.9528.5584.7183forward
CNT30175579Medicago truncatulaVigna angularis29.6726.0890.73151forward

Expression of CNT30147448

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MASLSSSSESVSFILRAIRLRNSGKSMVPLPSASTSLIMSCSSASVGFCPSDLITVPSSLVVIQPTVC

Sequence

>CNT30147448
GTAAATATTAACAGCATATTAACCAAACACAAATTGCATCCAATAGTTCTAGGTTCATAATAATAACCAAAAAAAGATGAAAAGTGAAGTAACAATGCAT
GGTAAGAAACAGCTAACCCAAACTACTGAAACAAGGGACAGAACAAACAAGTAGGAAACTAATAAGGAGCAGTACCAATTAAAGCAAACAAGAAAATAGA
CACTCGACCAGCAAAAACTAACGACCCTAATGGAAATAGAATCCTCATCAAAACTTATCTGCCCTGTCCCTTTTCTTTTTTATACGCTTTTAAAATTTCG
GTTATGGCTTCCTTAAGTTCCTCCTCTGAATCAGTGTCTTTCATCTTACGGGCCATCAGGTTGAGGAATTCAGGGAAATCAATGGTACCATTGCCATCAG
CATCAACTTCATTGATCATGTCTTGTAGCTCTGCCTCAGTTGGGTTTTGCCCAAGTGACCTCATTACAGTTCCGAGTTCCTTGGTAGTAATACAACCTAC
AGTGTGTTA