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Detailed information on CNT3011614


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 5e-38

BLAST vs NONCODE:
NONPOPT000052, E-value = 5e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673553Zea maysSetaria viridis45.5481.6291.52342forward
CNT30534974Zea maysEucalyptus grandis9.1928.489.8669forward
CNT30379145Zea maysManihot esculenta26.544.2283.92199forward
CNT30487677Zea maysOlea europaea21.344.0884.38160forward
CNT30387589Zea maysTriticum turgidum26.639.6191200forward
CNT30586817Zea maysMusa acuminata30.8923.2585.78232forward
CNT30234205Zea maysBrassica oleracea30.7644.5184.42231forward
CNT30553743Zea maysOryza glaberrima27.0327.3293.1203forward
CNT30248464Zea maysAvena sativa31.1638.4290.17234forward
CNT30311950Zea maysCamelina sativa23.1724.1386.21174forward
CNT3080440Zea maysBrassica juncea30.8942.5785.78232forward
CNT30607166Zea maysGossypium raimondii22.546.385.21169forward
CNT30231884Zea maysAnanas comosus20.9114.987.9157forward
CNT30479425Zea maysArabidopsis halleri23.1729.6983.33174forward
CNT30367843Zea maysSorghum bicolor83.3688.1789.78626forward
CNT3037982Zea maysCucumis melo25.734.9682.9193forward
CNT30332036Zea maysDioscorea rotundata27.5665.7183.09207forward
CNT30576402Zea maysOryza barthii27.0326.9693.1203forward
CNT30496859Zea maysDigitaria exilis52.7364.689.9396forward
CNT30116198Zea maysOryza nivara26.7615.2393.03201forward
CNT30594303Zea maysEragrostis curvula53.2662.484.75400forward
CNT30335796Zea maysCynara cardunculus30.4957.5482.97229forward

Expression of CNT3011614

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MTWRSSAAEMKPFWSLSKTRKASLNSAICSSVSWSAMAEVCGEGTRRGITEEGRGCVLVLASLLLIGLSGWGTR

>peptide 2 (39 aa)
MTTPPKRTTTRHYHLHDTDAYSKGHDKVQLVCLIIRFNP*

>peptide 3 (71 aa)
MAELGSRDETVLVLVEDAEGLLELRDLLVGELVRHGRGLRRGHAARNNRRREGMCARARVTSVDWPERMGNE

Sequence

>CNT3011614
CATGGACCAGAAAAAATTATAAAGAACTAGAATTCTTATTCCATATTATAAGTACTTAAGCTTGATAACATCATATAAGATTGATGAATTAGTTGACCCT
TTATATCATAATCCTAGCTCCACGCCTCCATACACAAAGACTTAAGACTAGCACAAAAGATCCAAAACCCTGGAAAATATGAGCTTCAACAAATCCTACA
GGTGCAATAATGCAAGATAACATCACAATAAAAAGAAACCAGGTATCTGATGTCGCGTTCCCATGACTACACCGCCTAAACGGACCACTACAAGACATTA
CCACCTGCATGACACTGATGCGTACTCAAAGGGACATGACAAAGTACAGCTTGTGTGCCTGATAATTCGCTTCAATCCATAGATACTTATTTCACGGGGA
CCGCTCCTCACTTGGCCATCATAACCTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCGTCGACGTCGGCCTCACGGATCATCTCGTCGACCTCCTC
GTCGGTCAGCTTCTCGCCAAGGTTGGTCATGACATGGCGGAGCTCGGCAGCCGAGATGAAACCGTTCTGGTCCTTGTCGAAGACGCGGAAGGCCTCCTTG
AACTCCGCGATCTGCTCGTCGGTGAGCTGGTCCGCCATGGCAGAGGTCTGCGGCGAGGGCACGCGGCGAGGAATAACCGAAGAAGGGAGGGGATGTGTGC
TCGTGCTCGCGTCACTTCTGTTGATTGGCCTGAGCGGATGGGGAACGAGGT