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Detailed information on CNT30149356


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 6e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672861Brachypodium distachyonSetaria viridis14.4456.7393.47337forward
CNT30534974Brachypodium distachyonEucalyptus grandis3.1330.0491.7873forward
CNT30545709Brachypodium distachyonIpomoea triloba10.0325.0585.04234forward
CNT30378266Brachypodium distachyonArabidopsis thaliana3.1721.786.4974forward
CNT30379145Brachypodium distachyonManihot esculenta9.5549.5687.44223forward
CNT30487677Brachypodium distachyonOlea europaea6.8644.0884.38160forward
CNT30504265Brachypodium distachyonNicotiana attenuata5.0138.3682.05117forward
CNT30156599Brachypodium distachyonPistacia vera10.0731.1785.11235forward
CNT3096793Brachypodium distachyonSolanum tuberosum9.943783.62232forward
CNT30560106Brachypodium distachyonActinidia chinensis9.9443.6185.78232forward
CNT30553743Brachypodium distachyonOryza glaberrima10.1531.991.14237forward
CNT30146219Brachypodium distachyonMedicago truncatula4.6743.9586.24109forward
CNT30311950Brachypodium distachyonCamelina sativa10.1532.8785.65237forward
CNT3073928Brachypodium distachyonBrassica juncea8.5345.4387.94199forward
CNT3014113Brachypodium distachyonZea mays10.3351.6192.95241forward
CNT30607166Brachypodium distachyonGossypium raimondii7.4647.6786.78174forward
CNT30216184Brachypodium distachyonKalanchoe fedtschenkoi8.5340.9586.93199forward
CNT30204543Brachypodium distachyonHelianthus annuus9.399.0983.87217forward
CNT30346128Brachypodium distachyonEragrostis tef10.8442.2486.96253forward
CNT30479425Brachypodium distachyonArabidopsis halleri9.6838.5784.07226forward
CNT30367748Brachypodium distachyonSorghum bicolor14.1885.0991.54331forward
CNT30120491Brachypodium distachyonCitrus clementina5.6136.987.79131forward
CNT3037982Brachypodium distachyonCucumis melo10.1542.9384.39237forward
CNT30101764Brachypodium distachyonOryza rufipogon6.4327.8892150forward
CNT30576528Brachypodium distachyonOryza barthii14.4450.3791.69337forward
CNT30496859Brachypodium distachyonDigitaria exilis7.9330.1893.51185forward
CNT30594303Brachypodium distachyonEragrostis curvula10.1536.9793.67237forward
CNT30175579Brachypodium distachyonVigna angularis5.1820.989.26121forward
CNT30335796Brachypodium distachyonCynara cardunculus7.3743.2288.37172forward

Expression of CNT30149356

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLLPQEQSKILLQTNSSRRSHQMQASQAHRKHYEFPQKSTNPSHQQHRFDRI*

>peptide 2 (53 aa)
MVRGLPSPSLSKRLKASLNSAICSSVSWSAMGASRSEDTATPARRGINGQSGGN

>peptide 3 (32 aa)
MSSIILKHYSSITDVLEEVANFTTENHLNFYN*

>peptide 4 (44 aa)
MLSSINWMVSHQLNKMLFTMSINRCNNTKGQHTIQNHYIYSTIY*

>peptide 5 (85 aa)
GPSLGHHDLDELLVVDLPIAVHIGLTDHLIDLLIGQLLPEVGHDMAELSSRDETVLVLVEDTEGLLELFLGVSILHLPCHQRQPR*

>peptide 6 (81 aa)
MTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAISVNLVDHVLQLCLGRVLPKGSHHSSKLLSSDATCKKKSFKVHL*

>peptide 7 (75 aa)
MTFFIKCSHRTKTIKPTSDLRFVFAHKILNLGLHDTQSSCLSWYHRSSMTFRHCYCTETGKEHCSKLTNKHSIAA*

>peptide 8 (68 aa)
MHPVTAPTCSSLRSSPKSYYKLIRADDLIRCKHRKHTENTTNSLRNQLTQAISNTGLTGSRAERQRLR*

>peptide 9 (53 aa)
MSCSSASVGFCPRDRITVPSSLVVMQPAKRNHSKFICKRTLFGKHDFFHQVFT*

Sequence

>CNT30149356
CGGGACCTTCACTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGATCTGCCCATCGCCGTCCACATCGGCCTCACGGATCATCTCATCGACCTCCT
CATCGGTCAGCTTCTCCCCGAGGTTGGTCATGACATGGCGGAGCTCAGCAGCAGAGATGAAACCGTTCTGGTCCTTGTCGAAGACACGGAAGGCCTCCTT
GAGCTCTTCCTCGGAGTCAGTATCCTTCATCTTCCTTGCCATCAGCGTCAACCTCGTTGATCATGTCCTGCAGCTCTGCCTCGGTAGGGTTCTGCCCAAG
GGATCGCATCACAGTTCCAAGCTCCTTAGTAGTGATGCAACCTGCAAAAAGAAATCATTCAAAGTTCATTTGTAAGAGAACACTATTTGGCAAGCATGAC
TTTTTTCATCAAGTGTTCACATAGAACTAAAACAATCAAGCCCACTAGTGATTTAAGATTTGTTTTTGCTCATAAAATACTCAATTTAGGACTACATGAT
ACACAATCATCTTGTTTGTCATGGTACCACAGATCAAGCATGACTTTCAGGCACTGTTACTGTACGGAAACTGGCAAAGAACATTGCTCAAAGTTAACAA
ATAAACACAGTATTGCAGCATGATCAGTAAAGATTAATGTTATAGCAGACGGGGTACCGTGAAGGGAAATGTAAGATAAGTCCACTGCCAGCAGCTCTCT
TAAAATATCACTGATATTGATCCCAACATATCGAATTCCAGTCTTTGTGTGACTATTCCACAGATGGGTTAAAAATAATGGGAATCACCAAACATAAATA
CTTAACTGCCTATAGGCAGAAGACATAACATGCCTTACGAATCCAATGCTAAGTAGCATCAATTGGATGGTTTCCCACCAACTAAATAAAATGCTATTCA
CAATGTCCATTAACAGATGTAATAATACAAAAGGTCAACACACAATTCAAAATCATTATATATACAGTACAATATACTAGATTTAGTATATAACACAAAT
CACAGACCAGACCAGCTTGCATTTAAGACTTGCTTGAAAATAAACTTATATTGTATCAGACAAAGAAATAATGAGTATTCAACAAAACAGTAAGAGTGAG
CTATAGAGAGTGGCCATAAAAGAGCAAGCTAGTGTGCACTTGATCTCTGAATTCTAGGCTATCATGCACCAAATTTGATCATAATAAACCACTATTATCA
CAAAGTTCTTCTAGAAGTACTGATGTTCTAGAAGAAGATGCTAATTTCACAAAAGAAAATCATCTCAATTTCTACAGCTAGAACATAAATGCAGCACATC
GAATTGCACCTCAATTTCTAACTAGTCCCACTGTTTACCTCATTGACCTAAATCCAGCAAGAGTGGATACTTAGATTAGAAGACATCTCAAGCACCCACG
CATGAGAAGAATCTAATTCGCACGGACCTCCCATCATTATATGTACAGTACAGTATCAGACAAAGAAATAACTAGACCAGCTTGCATTTAAGACTTGCTT
GAAAGTAAACCTTTATTGTATCATACAAAGAAATAACCAGTATTCAACAAAACAGTAAAAATGAGCTATGGAGAGTGACCATAAAAGAGCAAACTAATTT
CTGGCTATCATGAGTTCGATCATACTAAAACACTATTCTAGCATTACTGATGTTCTAGAAGAAGTGGCTAATTTCACAACAGAAAATCATCTCAATTTCT
ACAACTAGAACATAAATGCAGCTCAGCCAATTGCACCACAATTTCTACAACTAGTCCAACCGTTTTACTTCATCGACCTAATTCCAGCAACAGGGGATAC
TTAGAAGCCATCTCAAGCACTCGCGCATGAGAAGAAGCTAATTCGCACGGATCTCCCATCATTACAAACTCCGAAACCTCTAAACCCTAGTTTCTAAATG
CATCCAGTCACGGCCCCGACATGCTCCTCCCTCAGGAGCAGTCCAAAATCCTACTACAAACTAATTCGAGCAGACGATCTCATCAGATGCAAGCATCGCA
AGCACACCGAAAACACTACGAATTCCCTCAGAAATCAACTAACCCAAGCCATCAGCAACACAGGTTTGACCGGATCTAGGGCCGAGCGGCAACGGCTCCG
ATAGAGACCAAATTCGGCCGGATCGGGCGACGCCCGAGCTCGATCCGGCCGCGACGGACCGAGGGGTAGGGGATGGTAAGAGGGTTACCGTCGCCATCCT
TGTCGAAGAGGCTGAAGGCCTCCTTGAACTCGGCGATCTGCTCGTCGGTGAGCTGGTCCGCCATGGGAGCTTCGAGAAGCGAGGATACGGCGACGCCTGC
ACGAAGGGGAATAAACGGGCAAAGTGGTGGTAAT