« Back to Musa acuminata search


Detailed information on CNT30586817


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 3e-37

BLAST vs NONCODE:
NONPOPT000052, E-value = 3e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673553Musa acuminataSetaria viridis23.2555.3785.78232forward
CNT30530065Musa acuminataEucalyptus grandis11.5233.9286.96115forward
CNT30545709Musa acuminataIpomoea triloba19.2420.5684.38192forward
CNT30379145Musa acuminataManihot esculenta19.2442.6786.46192forward
CNT30487677Musa acuminataOlea europaea13.1336.0985.5131forward
CNT30504265Musa acuminataNicotiana attenuata11.7238.3686.32117forward
CNT30156599Musa acuminataPistacia vera18.7424.881.82187forward
CNT3096793Musa acuminataSolanum tuberosum19.6431.2685.71196forward
CNT30560106Musa acuminataActinidia chinensis18.7435.1583.96187forward
CNT30234205Musa acuminataBrassica oleracea23.1544.5185.28231forward
CNT30553743Musa acuminataOryza glaberrima19.4426.1186.08194forward
CNT30248464Musa acuminataAvena sativa22.8537.4488.6228forward
CNT3073928Musa acuminataBrassica juncea23.1552.7484.85231forward
CNT3011614Musa acuminataZea mays23.2530.8985.78232forward
CNT30607166Musa acuminataGossypium raimondii17.3347.484.39173forward
CNT30216184Musa acuminataKalanchoe fedtschenkoi15.9332.7286.16159forward
CNT30479425Musa acuminataArabidopsis halleri18.6431.7479.57186forward
CNT30367843Musa acuminataSorghum bicolor23.2532.6887.93232forward
CNT3037982Musa acuminataCucumis melo19.2434.7883.85192forward
CNT30332036Musa acuminataDioscorea rotundata20.7465.7185.51207forward
CNT30148143Musa acuminataBrachypodium distachyon23.2544.9687.07232forward
CNT30576402Musa acuminataOryza barthii19.4425.7686.08194forward
CNT30497675Musa acuminataDigitaria exilis23.2538.9387.93232forward
CNT30594303Musa acuminataEragrostis curvula19.4430.2786.08194forward
CNT30335796Musa acuminataCynara cardunculus22.9557.5483.84229forward

Expression of CNT30586817

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQEKQVITQHRANQQESEMMVAVPKATT*

>peptide 2 (32 aa)
MQSLRVKESVDNIEFSRDVLMTLIHFRENRKL*

>peptide 3 (66 aa)
MTEFCSRDEAILVLIKHSESLLELGDLIVGELLRHASSAIVLTREGWRERLEILEQQLEEERETKKR

>peptide 4 (36 aa)
AANLLCSFNPICRRFSNEDYQMNNNMLHQSIARERK*

Sequence

>CNT30586817
TGCAGCTAACCTTCTTTGTAGTTTTAATCCAATATGCAGAAGATTTTCTAATGAGGATTATCAAATGAACAACAACATGTTACATCAATCCATAGCTCGT
GAGAGGAAATAAATGGAACCATTTTTTTAGCATTCCTTCACGTATGCAATCACTGCGAGTGAAGGAATCAGTGGACAATATAGAATTTTCAAGAGACGTT
CTAATGACATTAATACATTTTAGGGAAAACCGAAAGCTGTAAACTGTTCTCAATTCAAAGAGGTATCGAAATAGAAATTTTTGTGCAAGGATCAGTTAGT
CGGCACTTTCACCTGTTTCACATGGCTCAAGAGAAACAAGTGATAACTCAGCACCGGGCCAATCAGCAAGAATCCGAGATGATGGTAGCTGTTCCAAAGG
CAACTACTTGATCACCAGAACCATCAGTCAGAACAAGTGATACCGAAAAAAAACTGTGTTAAAGATAGTCCGAACCAAAACCAAACACTCGGATAGAAAA
CACGTAGGGTCTGTAAGACAGATGCAATAGGGAACAACCACCCCATATATATAAGACACCGATGCTTGTGTTTGCAGCTACACTACTGGCTGAGGAATTA
GAGTGACATTTTATAACTCATCCGCTGCTAGATTTCCTCCCTTTCTCACTTTCTGTTTTGTCGTCTGGGTTCACTTGGCCATCATGACTTTAACAAATTC
CTCATAGTTGATTTGGCCATCGCCATCAACATCGGCTTCACGAATCATTTCATCGACTTCCTCATCGGTGAGCTTCTCGCCGAGGTTGGTCATGACATGA
CGGAGTTCTGCAGCAGAGATGAAGCCATTCTGGTCCTTATCAAACACTCGGAAAGCCTCCTTGAACTCGGCGATCTGATCGTCGGTGAGCTGCTCCGCCA
TGCCTCCTCTGCAATCGTTCTCACAAGAGAAGGATGGAGAGAGAGATTGGAGATCCTTGAACAACAACTAGAAGAAGAAAGGGAGACGAAGAAGAGGA