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Detailed information on CNT30367748


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 7e-55

BLAST vs NONCODE:
NONPOPT000052, E-value = 5e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Sorghum bicolorOryza sativa26.745.0691.35104forward
CNT30672861Sorghum bicolorSetaria viridis9159.693.5354forward
CNT30545709Sorghum bicolorIpomoea triloba60.1525.0584.19234forward
CNT30373447Sorghum bicolorArabidopsis thaliana25.9616.5885.15101forward
CNT30617519Sorghum bicolorSesamum indicum60.1511.6585.47234forward
CNT30379145Sorghum bicolorManihot esculenta59.1351.1186.09230forward
CNT30156599Sorghum bicolorPistacia vera60.4131.1785.11235forward
CNT3097357Sorghum bicolorSolanum tuberosum59.6411.682.76232forward
CNT30125031Sorghum bicolorPhyscomitrium patens24.4213.2783.1695forward
CNT30387589Sorghum bicolorTriticum turgidum85.3515.9587.65332forward
CNT30560106Sorghum bicolorActinidia chinensis59.6443.6185.78232forward
CNT3085845Sorghum bicolorVigna radiata31.119.2488.43121forward
CNT30553743Sorghum bicolorOryza glaberrima66.8434.9992.69260forward
CNT30146219Sorghum bicolorMedicago truncatula25.9640.7387.13101forward
CNT30311950Sorghum bicolorCamelina sativa60.9332.8783.12237forward
CNT3014113Sorghum bicolorZea mays62.2151.8295.87242forward
CNT30231884Sorghum bicolorAnanas comosus48.8418.0388.42190forward
CNT30216184Sorghum bicolorKalanchoe fedtschenkoi51.1640.9587.94199forward
CNT30204543Sorghum bicolorHelianthus annuus53.9895.8984.29210forward
CNT30625935Sorghum bicolorDaucus carota25.967.1185.15101forward
CNT30346128Sorghum bicolorEragrostis tef66.0742.985.6257forward
CNT30479425Sorghum bicolorArabidopsis halleri58.138.5781.42226forward
CNT30621990Sorghum bicolorCajanus cajan23.1413.688.8990forward
CNT30596276Sorghum bicolorOryza meridionalis23.1416.1692.2290forward
CNT30483255Sorghum bicolorChara braunii33.4211.6982.31130forward
CNT30104901Sorghum bicolorOryza longistaminata26.746.4291.35104forward
CNT30120491Sorghum bicolorCitrus clementina33.6836.989.31131forward
CNT3037982Sorghum bicolorCucumis melo61.1843.1283.61238forward
CNT30149356Sorghum bicolorBrachypodium distachyon85.0914.1891.54331forward
CNT30101764Sorghum bicolorOryza rufipogon37.7927.3291.84147forward
CNT30576528Sorghum bicolorOryza barthii9152.9192.09354forward
CNT30116198Sorghum bicolorOryza nivara55.2716.2989.77215forward
CNT30594303Sorghum bicolorEragrostis curvula61.9537.691.29241forward
CNT30175579Sorghum bicolorVigna angularis31.1120.990.08121forward
CNT3049908Sorghum bicolorCucumis sativus21.3410.1187.9583forward
CNT3039761Sorghum bicolorMarchantia polymorpha28.539.9988.29111forward

Expression of CNT30367748

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MAELSSRDETILVLVKDAEGLLELLLRVGVLHLPCHQHQPH*

>peptide 2 (70 aa)
MTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAISINLIDHVLQLCLGRVLAKGAHHSSKLLGGDAA

Sequence

>CNT30367748
GTGCATGATAACTCGCTTCAATTTATAGATATACTTATTTCATGGGGACCGCTCCTCACTTGGCCATCATAACCTTAACAAACTCTTCATAGTTGATCTG
GCCGTCGCCATCGACGTCAGCCTCACGGATCATCTCGTCGACCTCCTCGTCGGTCAGCTTCTCGCCGAGGTTGGTCATGACATGGCGGAGCTCAGCAGCC
GAGATGAAACCATTCTGGTCCTTGTCAAAGACGCGGAAGGCCTCCTTGAGCTCCTCCTCAGAGTCGGTGTCCTTCATCTTCCTTGCCATCAGCATCAACC
TCATTGATCATGTCCTGCAGCTCTGCCTCGGTAGGGTTCTGGCCAAGGGAGCGCATCACAGTTCCAAGCTCCTTGGTGGTGATGCAGCC