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Detailed information on CNT30248464


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672188Avena sativaSetaria viridis31.8638.2691.75194forward
CNT30534974Avena sativaEucalyptus grandis11.3328.495.6569forward
CNT30545709Avena sativaIpomoea triloba30.8720.1383.51188forward
CNT30617519Avena sativaSesamum indicum27.428.3184.43167forward
CNT30379145Avena sativaManihot esculenta31.242.2286.84190forward
CNT30487977Avena sativaOlea europaea17.5741.1586.92107forward
CNT30156599Avena sativaPistacia vera29.8924.1485.16182forward
CNT3097357Avena sativaSolanum tuberosum31.869.784.54194forward
CNT30387589Avena sativaTriticum turgidum80.4623.5586.12490forward
CNT30560106Avena sativaActinidia chinensis27.4231.3986.83167forward
CNT30586817Avena sativaMusa acuminata37.4422.8588.6228forward
CNT30234205Avena sativaBrassica oleracea36.7843.1687.5224forward
CNT30553743Avena sativaOryza glaberrima32.0226.2489.74195forward
CNT30311950Avena sativaCamelina sativa28.924.4185.8176forward
CNT3080440Avena sativaBrassica juncea36.7841.189.29224forward
CNT3011614Avena sativaZea mays38.4231.1690.17234forward
CNT30607166Avena sativaGossypium raimondii27.4245.7587.43167forward
CNT30231884Avena sativaAnanas comosus25.7814.990.45157forward
CNT30216184Avena sativaKalanchoe fedtschenkoi26.1132.7287.42159forward
CNT30204543Avena sativaHelianthus annuus12.4834.784.2176forward
CNT30346128Avena sativaEragrostis tef33.3333.8983.25203forward
CNT30479425Avena sativaArabidopsis halleri28.930.0384.09176forward
CNT30367843Avena sativaSorghum bicolor38.4232.9689.74234forward
CNT30483255Avena sativaChara braunii20.0310.9783.61122forward
CNT3026117Avena sativaPopulus trichocarpa17.5724.9482.24107forward
CNT30120491Avena sativaCitrus clementina14.1224.2388.3786forward
CNT3037982Avena sativaCucumis melo31.6934.9683.94193forward
CNT30332036Avena sativaDioscorea rotundata34.8167.385.85212forward
CNT30148143Avena sativaBrachypodium distachyon37.7744.5791.74230forward
CNT30576402Avena sativaOryza barthii32.0225.989.74195forward
CNT30497675Avena sativaDigitaria exilis38.4239.2688.89234forward
CNT30116198Avena sativaOryza nivara32.0214.7788.72195forward
CNT30594303Avena sativaEragrostis curvula30.7129.1789.3187forward
CNT30335796Avena sativaCynara cardunculus37.2757.0482.82227forward

Expression of CNT30248464

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTWRSSAAEMKPFWSLSNTLKASLNSAIWSSVS*

>peptide 2 (33 aa)
MVAAAVVDRTYAPARWNKVSAADARSSRERLGAF

>peptide 3 (68 aa)
MAELSSRDEAILVLVEHPEGLLELGDLVVGELIRHGRRRGGGSYVRTRAMEQGKRRGREEFEREAGSVL

>peptide 4 (35 aa)
RLPIDTRRVKHKLMKKYTTNGPNCNQDTPGRGKFT*

>peptide 5 (43 aa)
MHSPRSTVQCSFGHHDLDKFLVVDLAIAVNISFTDHLVNLLVG*

Sequence

>CNT30248464
CCGGCTTCCCATTGATACTAGAAGAGTCAAACATAAGTTGATGAAGAAATATACTACAAACGGGCCCAACTGCAATCAGGATACACCAGGGAGGGGCAAG
TTCACATAAACATTTGAGAGGTCTGGAAACACACTGGATAGAAGGAGCATAGCACGAATTGCGTCGTCCGTTTTAGCAGCTACAGCTAGTAGGATGCTTA
ACTGGAAATCGATCGAATAAGAGTTCACGTCTTAAACTAATATGCAATGCACAGTCCCCGGAGCACGGTTCAATGCTCATTTGGCCATCATGACCTTGAC
AAATTCCTCGTAGTTGATCTGGCCATCGCCGTCAACATCAGCTTCACGGATCATCTCGTCAACCTCCTCGTCGGTTAGCTTCTCGCCAAGGTTTGTCATG
ACATGGCGGAGCTCAGCAGCAGAGATGAAGCCATTTTGGTCCTTGTCGAACACCCTGAAGGCCTCCTTGAACTCGGCGATCTGGTCGTCGGTGAGCTGAT
CCGCCATGGTCGCCGCCGCGGTGGTGGATCGTACGTACGCACCCGCGCGATGGAACAAGGTAAGCGCCGCGGACGCGAGGAGTTCGAGAGAGAGGCTGGG
AGCGTTCTG