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Detailed information on CNT30231884


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Ananas comosusSetaria viridis26.8553.487.28283forward
CNT30534974Ananas comosusEucalyptus grandis6.7429.2298.5971forward
CNT30545709Ananas comosusIpomoea triloba24.3827.5282.88257forward
CNT30378266Ananas comosusArabidopsis thaliana20.6863.9381.65218forward
CNT30617519Ananas comosusSesamum indicum27.2314.2981.88287forward
CNT30379145Ananas comosusManihot esculenta22.6853.1186.19239forward
CNT30487677Ananas comosusOlea europaea11.6733.8886.18123forward
CNT30504265Ananas comosusNicotiana attenuata10.7237.0585.84113forward
CNT30156599Ananas comosusPistacia vera30.3642.4484.38320forward
CNT3097357Ananas comosusSolanum tuberosum30.8316.2581.85325forward
CNT30125031Ananas comosusPhyscomitrium patens16.1323.7482.94170forward
CNT30560106Ananas comosusActinidia chinensis27.754.8984.59292forward
CNT3085845Ananas comosusVigna radiata20.0216.1188.63211forward
CNT30234205Ananas comosusBrassica oleracea14.930.2586.62157forward
CNT30553673Ananas comosusOryza glaberrima29.4140.6387.42310forward
CNT30147448Ananas comosusMedicago truncatula1326.9289.05137forward
CNT30248464Ananas comosusAvena sativa14.925.7890.45157forward
CNT30311950Ananas comosusCamelina sativa27.740.583.9292forward
CNT3073928Ananas comosusBrassica juncea14.935.8487.26157forward
CNT3011614Ananas comosusZea mays14.920.9187.9157forward
CNT30607166Ananas comosusGossypium raimondii12.6236.4486.47133forward
CNT30216184Ananas comosusKalanchoe fedtschenkoi18.0339.0985.79190forward
CNT30204543Ananas comosusHelianthus annuus9.0143.3886.3295forward
CNT30346128Ananas comosusEragrostis tef26.8547.2582.69283forward
CNT30479425Ananas comosusArabidopsis halleri30.9355.6380.98326forward
CNT30367748Ananas comosusSorghum bicolor18.0348.8488.42190forward
CNT30621990Ananas comosusCajanus cajan15.2824.3286.96161forward
CNT30596276Ananas comosusOryza meridionalis16.5131.2485.63174forward
CNT3025976Ananas comosusPopulus trichocarpa6.5522.1985.5169forward
CNT30120491Ananas comosusCitrus clementina22.7767.6185240forward
CNT3037982Ananas comosusCucumis melo21.4440.9482.3226forward
CNT30332036Ananas comosusDioscorea rotundata14.7149.2189.68155forward
CNT30148143Ananas comosusBrachypodium distachyon14.930.4390.45157forward
CNT30101815Ananas comosusOryza rufipogon21.9242.6287.45231forward
CNT30576402Ananas comosusOryza barthii27.2338.1187.8287forward
CNT30496859Ananas comosusDigitaria exilis13.1922.6889.21139forward
CNT30594303Ananas comosusEragrostis curvula30.9350.8687.12326forward
CNT30175579Ananas comosusVigna angularis20.0236.4489.57211forward
CNT30335796Ananas comosusCynara cardunculus14.939.4583.44157forward
CNT3039763Ananas comosusMarchantia polymorpha25.3343.5680.9267forward

Expression of CNT30231884

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRYCPLLCYFILFSLLPPSSHFLLAFSILN*

>peptide 2 (48 aa)
MRRGVGLLCSRVLQIATAMRERIAQNACSPLTKMPHCCLICSYSSFCR*

>peptide 3 (60 aa)
MTWRSSAAEMKPFWSLSNTLKASFSSSSESVSFILRAIRFRNSGKSIVPFPSASTSLIMS*

>peptide 4 (48 aa)
MAPRTPSSESDDEEGSDRGEERDRNATQRNRLRNRNERSVFRVRSAKHG

Sequence

>CNT30231884
CTTTGAGAGTCTAGGTAATCATCTGAGTACACTGATAAGCCAATTCAAAGCGTTGCTCCCCCAGTTAAGTACGCTTAAATAGTAGGGAAAGTCAACTAAG
GCGTATGAGGTACTGCCCCCTCCTTTGTTATTTTATTTTATTTTCTTTGCTCCCTCCAAGTTCTCACTTCTTATTAGCTTTCTCCATTCTCAACTAACAC
CAGTTTCCTTTTATTTCCTCTTATTTTATTTTTGCCCCCCCCTCCAAGTTCCCACTTCTTATAAGCTTCTCCATTCTCAACAACACCAGTTCTCGCCGTA
AGTCAGATAAGTATGTAGGAATCAAACTCCCCGAATTGACATCTGAATGCGACGCGGTGTTGGTCTCCTCTGCTCCCGAGTTCTCCAAATTGCAACTGCG
ATGCGCGAACGTATCGCCCAGAACGCTTGTAGTCCACTCACAAAGATGCCTCACTGCTGCCTCATCTGCAGTTATTCATCTTTCTGCCGTTAGACCGAAA
GTTGATCTGGCCGTCACCATCAACATCAGCCTCGCGGATCATCTCGTCAACCTCCTCATCAGTTAGCTTCTCCCCGAGGTTGGTCATGACGTGGCGGAGC
TCGGCAGCAGAGATGAAGCCGTTCTGGTCCTTATCGAACACCCTGAAGGCCTCCTTCAGTTCCTCCTCAGAATCGGTGTCCTTCATCTTGCGCGCCATCA
GGTTCAGGAATTCTGGGAAATCGATTGTACCATTCCCATCAGCATCCACCTCATTGATCATGTCCTGAAGCTCTGCCTCAGTTGGGTTCTGGCCCAAGGA
GCGCATCACAGTCCCCAGCTCCTTTAATCAGACCATCTCCGTCCTTGTCGAACAAGCTGAAGGCCTCCTTGAACTCGGAGATCTGGTCGTCCGTGAGCTG
ATCCGCCATGGCTCCTCGGACACCGAGCTCGGAGAGCGACGACGAAGAGGGATCGGATCGAGGCGAGGAGAGAGATCGCAACGCAACGCAACGCAATCGA
CTACGAAATCGCAACGAGCGGAGCGTTTTTCGCGTTCGTTCGGCGAAGCATGGG