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Detailed information on CNT30672655


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 6e-67

BLAST vs NONCODE:
NONPOPT000052, E-value = 2e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617519Setaria viridisSesamum indicum6015.8383.33318forward
CNT30156599Setaria viridisPistacia vera59.6241.9184.49316forward
CNT3097357Setaria viridisSolanum tuberosum60.381684.06320forward
CNT3085845Setaria viridisVigna radiata38.6815.6587.32205forward
CNT30553743Setaria viridisOryza glaberrima65.2846.5792.49346forward
CNT30311950Setaria viridisCamelina sativa58.342.8685.44309forward
CNT30231884Setaria viridisAnanas comosus53.426.8587.28283forward
CNT30216184Setaria viridisKalanchoe fedtschenkoi37.5540.9586.93199forward
CNT30346128Setaria viridisEragrostis tef60.7553.7688.82322forward
CNT30479425Setaria viridisArabidopsis halleri59.4353.7583.81315forward
CNT30120491Setaria viridisCitrus clementina40.5760.5684.65215forward
CNT3037982Setaria viridisCucumis melo49.6247.6486.31263forward
CNT30101815Setaria viridisOryza rufipogon38.4937.6493.14204forward
CNT30576402Setaria viridisOryza barthii65.2845.9592.49346forward
CNT30594303Setaria viridisEragrostis curvula61.5150.8693.56326forward
CNT30175579Setaria viridisVigna angularis38.6835.4188.29205forward
CNT3039763Setaria viridisMarchantia polymorpha32.2627.983.04171forward

Expression of CNT30672655

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HYHLHDTDTYSKGHDKLQLVILITVQFGQTYFMGTAPHLAIMTLTNSS*

>peptide 2 (91 aa)
MTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAIRFRNSGKSMVPLPSASTSLIMSCSSASVGAAARARDAEGGRERERVLALASLR*

Sequence

>CNT30672655
CATTACCACCTGCATGATACTGATACGTACTCAAAGGGACATGACAAACTACAGCTTGTGATCCTGATAACAGTTCAATTTGGACAGACTTATTTCATGG
GGACCGCTCCTCACTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCATCCACGTCAGCCTCGCGGATCATCTCATCGACTTC
CTCATCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTTGTCGAAGACGCGGAAGGCCTCC
TTGAGCTCCTCCTCGGAATCAGTGTCCTTCATCTTCCTTGCCATCAGGTTTAGGAACTCCGGGAAGTCGATGGTCCCGTTGCCATCAGCATCAACCTCGT
TGATCATGTCCTGCAGCTCTGCTTCAGTAGGGGCTGCGGCGAGGGCACGCGACGCGGAAGGGGGGAGAGAGAGAGAGAGGGTGCTCGCGCTCGCGTCACT
CCGTTGATTGGGCCTGCGCGGATGGGGAAC