Detailed information on CNT30693832


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673126Oryza sativaSetaria viridis9.4444.3990.72194forward
CNT30534974Oryza sativaEucalyptus grandis3.5530.0491.7873forward
CNT30373447Oryza sativaArabidopsis thaliana10.1234.1585.1208forward
CNT30487977Oryza sativaOlea europaea3.426.9288.5770forward
CNT30504265Oryza sativaNicotiana attenuata6.7645.5785.61139forward
CNT30156599Oryza sativaPistacia vera9.2925.3386.39191forward
CNT3096793Oryza sativaSolanum tuberosum8.1726.7985.12168forward
CNT30560106Oryza sativaActinidia chinensis9.3936.2885.49193forward
CNT30553799Oryza sativaOryza glaberrima21.8980.9499.78450forward
CNT30146219Oryza sativaMedicago truncatula7.9866.1385.37164forward
CNT30311950Oryza sativaCamelina sativa8.6624.6983.71178forward
CNT30613842Oryza sativaArabis alpina4.9123.7683.17101reverse complement
CNT3014113Oryza sativaZea mays5.423.7792.79111forward
CNT30204543Oryza sativaHelianthus annuus5.248.8682.24107forward
CNT30479425Oryza sativaArabidopsis halleri8.830.8987.85181forward
CNT30367748Oryza sativaSorghum bicolor5.0626.7491.35104forward
CNT30596276Oryza sativaOryza meridionalis22.5283.1295.9463forward
CNT30104901Oryza sativaOryza longistaminata78.6599.8894.431617forward
CNT30120491Oryza sativaCitrus clementina7.141.1387.67146forward
CNT30332036Oryza sativaDioscorea rotundata3.062088.8963forward
CNT30101764Oryza sativaOryza rufipogon16.6363.5798.83342forward
CNT30576402Oryza sativaOryza barthii14.339.0499.66294forward
CNT30594303Oryza sativaEragrostis curvula9.129.1794.65187forward
CNT30175579Oryza sativaVigna angularis7.5926.9488.46156forward

Expression of CNT30693832

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MQPAQCIQRSAQESTKWNMRLSRSTLIKLTQHGPLVLQYCNIVLCPQSTILRPRNQSCPES*

>peptide 2 (29 aa)
MNLFHRMIVLDRIIEHIIQITDHYMLQSR*

>peptide 3 (91 aa)
MSLFFLRVMMVHQHTITQHFFQHYWCTTHSSFNTVVQRQISTEALEFPLNKLAIGIILLLQNQIHTSILHKVWYIPHPNFKTTQNHWPNST*

Sequence

>CNT30693832
CCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTAGACCACCTAACCCGA
TCGCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTTTAGTTCACTTCAGAC
AGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGACGTCAGCCTCCTTGAG
CTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCTGGGAAGTCAATGGTCCCATTGCCATCAGCATCAACCTCGTTGATC
ATGTCCTGCAGCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGGTTCCAAGCTCCTTAGTAGTGATGCAACCTGCACAATGTATTCAGAGAT
CAGCACAAGAGAGTACTAAATGGAACATGCGATTATCTCGTTCAACGCTTATAAAATTAACACAACATGGTCCTTTAGTGCTGCAATATTGTAATATTGT
TTTATGTCCACAAAGTACAATTTTAAGACCAAGAAATCAAAGTTGTCCTGAGTCCTGACAACAGAGTACATACACATCACAAAACCACCATCAGTATCGT
TATCACTTTCAGCCAATTTATGAACCTATTTCACAGAATGATAGTGCTAGATAGAATCATTGAACATATAATACAAATCACAGACCACTATATGCTACAG
TCCAGATGAGAATCATGAAACGATAAGAATGTGATGCCTAGGTTTAACAGCCACTTAGGTAGCTTCCCGCCACCGCACTAGCATACGATCAACTCATAAA
CCTACATCAATAATTATTGTGTACACTAGATGTGGCACAAATCACAAACCAGCCCAGCTTGCATCTAAGACTTGCTAAAAATGAACTTCTCTTGCGCACG
AGCAAGAAATAACTACAGGCCGCCGAAGAATTCAAAACATAGGTTTTAATAAACTATGGCCACAAAAGAGCACTTTACATCTTAAATGTTGGTCTAAGAA
CTGCATTGATGTCTCTATTTTTCCTTCGTGTAATGATGGTACACCAACATACTATCACTCAACACTTCTTTCAACACTACTGGTGTACAACCCACAGTTC
TTTCAACACTGTTGTACAAAGACAAATATCAACTGAAGCACTAGAATTTCCCCTAAACAAACTAGCCATAGGCATCATACTGCTATTGCAAAACCAGATT
CACACCTCAATTCTACATAAAGTTTGGTATATTCCACACCCAAATTTCAAAACCACACAGAATCATTGGCCTAACTCCACATAGAGATTCTCAAGCACTC
GTGGTAGATCATCATGTAAACCAATGTTCACGCCATGCTAAATAACAAATGGCATGATTCACAAAACTCGATGTACGGATCCTCCTCTCCAAATCAAACA
ACTCTCTGCCGCTCTTAGCCCCTAGTTCAAAGGGCCTAGTTGCTGATCCCAAATCATCCATTCCTCTAAAGCACGGCAAAAATCCAAAACACACCATACA
TCGAAACACACAAAATCCGCTAAGATCACGCCCCCCACGAAAACACAGCCGCTGCACAGCAAAAACAGCTAAACGAGGCGAAATCATCCCGAATCACCGC
CGAACCACAAATCCACACCCAACCCGTCACAGGATCAACCGGATCTAGCGCCCCTGGACACACGAAACCCTACCGCGACACCGCAATTCGCCCGGATCGA
GCTCCGCGTCGCCCGATCCGGCCGCGCCGCCCAGAGACCGCGCGCGTGCCCCAACGTGGGGGGAGGAAGAGGAGGAGAAGAGAGAGAGAGAGAGGGGGGA
GTGGTGGGTGGCGCGCGTTACCGTCGCCGTCCTTGTCGAAGAGGCTGAACGCCTCCTTGAACTCGGCGATCTGCTCGTCGGTGAGCTGGTCCGCCATGGG
GGGTTGGTGGTGGAGGCGAGGTTGGGGGTGTGGAAGCTTCGAGAAGGTTCCGCGAG