« Back to Chara braunii search


Detailed information on CNT30483255


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675205Chara brauniiSetaria viridis12.3237.7486.13137forward
CNT30379145Chara brauniiManihot esculenta9.3523.1182.69104forward
CNT30487677Chara brauniiOlea europaea10.732.7884.87119forward
CNT30504265Chara brauniiNicotiana attenuata10.6138.6981.36118forward
CNT3096793Chara brauniiSolanum tuberosum12.1421.5383.7135forward
CNT30560106Chara brauniiActinidia chinensis11.1523.3186.29124forward
CNT30234205Chara brauniiBrassica oleracea11.624.8684.5129forward
CNT30248464Chara brauniiAvena sativa10.9720.0383.61122forward
CNT3080440Chara brauniiBrassica juncea11.6923.8586.15130forward
CNT301326Chara brauniiZea mays10.734.6984.87119forward
CNT30607166Chara brauniiGossypium raimondii9.6229.3283.18107forward
CNT30479425Chara brauniiArabidopsis halleri11.622.0182.17129forward
CNT30367748Chara brauniiSorghum bicolor11.6933.4282.31130forward
CNT3026117Chara brauniiPopulus trichocarpa12.3231.9383.94137forward
CNT3037982Chara brauniiCucumis melo11.9624.0981.95133forward
CNT30332036Chara brauniiDioscorea rotundata10.0735.5686.61112forward
CNT30148143Chara brauniiBrachypodium distachyon12.3226.5583.94137forward
CNT30497675Chara brauniiDigitaria exilis11.6921.8185.38130forward
CNT30594303Chara brauniiEragrostis curvula12.4121.5385.51138forward
CNT30335796Chara brauniiCynara cardunculus12.5935.1885140forward

Expression of CNT30483255

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKVTMIRVENEHRQLLSCISCSRVDEICIPTSNFKT*

>peptide 2 (65 aa)
MSSSPVVITNHPIVYTNHTARNPGLPESYYLQDPTTPNMKTRQNTTSSSELTSPNDRATREKCSA*

>peptide 3 (58 aa)
MIQTWVHKLPPQTVITNHVIVPSSHYKPSHRLHKSHRTESWLTRVLLSPRSYNPKHEN*

Sequence

>CNT30483255
CGTGCCCCCGCCAACAATTCGGTTGAGTGGAACGACATTGCTATTTCACTCAAATAAGCCGTTTATTCTTGGAAAATAGTAAAGTGCCGCATTGACCGAA
CGACAGACAGAGTGTGCAGACGAGGAAGAAGACGCTTCATTATTGAGCCACCAGTTGGTGGAACCATCAACAGGGATTGGTATGAAGGTGACGATGATCC
GAGTGGAAAACGAACATCGGCAGCTACTCTCTTGCATTTCTTGCTCGAGGGTCGATGAAATCTGTATTCCAACATCTAACTTCAAAACGTAAACAACTCA
CTTCGCCATCATCATCTTCACGAACTCCTCGTAATTGACTTGCCCATCGCCATCAACATCAGCCTCCCGGATCATTTCATCTACCTCGTCGTCAGTCAGC
TTCTCGCCAAGGTTCGTCATCACATGACGAAGCTACGCACATCAACAGAACAACGAAACGTACAATAACAATTATTTCTCAAACGAAAATGCCCGCTCCA
TGTGGTAATTCAAAAGACAGAAAGCGCAAGGATGATTCAGACGTGGGTTCATAAATTACCTCCACAAACTGTCATTACAAACCATGTCATCGTCCCCAGT
AGTCATTACAAACCATCCCATCGTCTACACAAATCACACCGCACGGAATCCTGGCTTACCAGAGTCCTATTATCTCCAAGATCCTACAACCCCAAACATG
AAAACTAGACAAAACACAACATCGTCATCAGAACTCACTTCTCCGAACGATCGTGCTACCCGCGAGAAATGCTCCGCATAAAACCTAAAGGACATTTCCC
AGACAAATCCCGTAATTGAAAAGACCCACTATCTGCAAGCTGTAGTAACAAAGCTCTAATCATTTTCAAACGCAGGTCAATTCCACGTCTCCAGAAAAGA
TCCAGCACCACAGCAAAATCCAATTACGAAAGCTTACACAGAGCAATACATAGGTGCGACACAGAACAGCCTAAAAAGGAAAATAAAAACAAAAACTACT
TTACACCCGCGATAAATTACAACCGCGATCGCGACGTAAACCCATTCCACCGAAAAATTTACGGTTATTACAAACGTCAGCAGTTGGTGCGCAGCCACGA
TCTTCGAGCGTC