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Detailed information on CNT30125031


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 3e-71

BLAST vs NONCODE:
NONCSAT000348, E-value = 1e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672188Physcomitrium patensSetaria viridis23.0432.5483.64165forward
CNT30545709Physcomitrium patensIpomoea triloba25.4219.4980.77182forward
CNT30373447Physcomitrium patensArabidopsis thaliana25.2829.7281.22181forward
CNT30617519Physcomitrium patensSesamum indicum33.9412.179.42243forward
CNT30379145Physcomitrium patensManihot esculenta14.1122.4487.13101forward
CNT30504265Physcomitrium patensNicotiana attenuata13.8332.4684.8599forward
CNT30156599Physcomitrium patensPistacia vera39.5337.5380.92283forward
CNT3097357Physcomitrium patensSolanum tuberosum34.2212.2580.41245forward
CNT30560106Physcomitrium patensActinidia chinensis34.6446.6281.45248forward
CNT3085845Physcomitrium patensVigna radiata30.7316.7981.82220forward
CNT30147448Physcomitrium patensMedicago truncatula23.7433.483.53170forward
CNT30311950Physcomitrium patensCamelina sativa2524.8381.01179forward
CNT3014113Physcomitrium patensZea mays13.6920.9984.6998forward
CNT30231884Physcomitrium patensAnanas comosus23.7416.1382.94170forward
CNT30204543Physcomitrium patensHelianthus annuus12.8542.0183.792forward
CNT30346128Physcomitrium patensEragrostis tef20.2524.2180.69145forward
CNT30479425Physcomitrium patensArabidopsis halleri37.5745.981.41269forward
CNT30367748Physcomitrium patensSorghum bicolor13.2724.4283.1695forward
CNT30621990Physcomitrium patensCajanus cajan20.9522.6684150forward
CNT30120491Physcomitrium patensCitrus clementina31.2863.183.48224forward
CNT3037982Physcomitrium patensCucumis melo17.4622.6483.2125forward
CNT30594303Physcomitrium patensEragrostis curvula29.1932.6179.9209forward
CNT30175579Physcomitrium patensVigna angularis2530.9283.8179forward
CNT30335796Physcomitrium patensCynara cardunculus13.1323.6285.1194forward
CNT3039763Physcomitrium patensMarchantia polymorpha24.8629.0480.9178forward

Expression of CNT30125031

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRNTATYIKLQDHIVEVLHQVTRQMGKISYTTDASRNYI*

>peptide 2 (32 aa)
FANDEQIVAPYEAPLARRISSARFWLQQVLFH*

>peptide 3 (30 aa)
MKLFSHHHFHKFLVIDLAVSIHFVICEFFT*

Sequence

>CNT30125031
CTTTGCTAACGATGAACAAATCGTTGCACCGTATGAGGCACCATTAGCAAGAAGGATTAGTTCAGCGAGATTCTGGCTGCAGCAGGTTCTGTTCCACTAG
AAACTAACGAGGGAATAAACTGATCATGAAACTATTTAGCCATCATCATTTTCACAAATTCCTCGTAATTGATCTGGCCGTCTCCATCCACTTCGTCATC
TGTGAGTTTTTCACCTAAATTAGTCATCACGTGCCTCAGCTCGGCAGCAGAAATAAAGCCATTCTGATCCTTGTCGAACACGCGGAAAGCCTCTTTCAAT
TCTTCCTCAGAATCAGTGTCTTTCATCTTACGAGCCATAAGGTTCAGAAATTCAGCAAAATCAATAGTGCCGTTGCCATCGGCATCGACTTCATTAATCA
TGTCCTGCAGTTCAGCTTCTGTGGGATTCTGCCCCAGTGATCTCATCACGGTTCCAAGCTCCTTGGTAGTAATGGAACCTTAACACATGTCGACCCTGGA
TTAACAGAGGAGGATGCGAAATACAGCCACTTACATAAAGTTACAGGATCACATTGTGGAAGTACTACACCAAGTTACTAGGCAAATGGGCAAAATATCG
TACACCACGGATGCATCTCGTAATTACATATAAATCTTAGTGGTAACCATCTCAGGCTAGCATCCGGAAAGCATTTTCTATATTTCTGTAAGACAAGCGG
AAAGGATCAAACTCAC