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Detailed information on CNT30596276


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 6e-42

BLAST vs NONCODE:
NONPOPT000052, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Oryza meridionalisOryza sativa83.1222.5295.9463forward
CNT30673126Oryza meridionalisSetaria viridis31.2439.8290.8174forward
CNT30545709Oryza meridionalisIpomoea triloba22.4413.3884125forward
CNT30373447Oryza meridionalisArabidopsis thaliana30.728.0885.96171forward
CNT30617482Oryza meridionalisSesamum indicum31.2410.8185.63174forward
CNT30487977Oryza meridionalisOlea europaea12.5726.9288.5770forward
CNT30504265Oryza meridionalisNicotiana attenuata22.0840.3385.37123forward
CNT30156599Oryza meridionalisPistacia vera25.6718.9788.81143forward
CNT3097357Oryza meridionalisSolanum tuberosum29.268.1585.28163forward
CNT30560106Oryza meridionalisActinidia chinensis30.5231.9585.29170forward
CNT3085845Oryza meridionalisVigna radiata30.3412.987.57169forward
CNT30553799Oryza meridionalisOryza glaberrima99.8210095.86556forward
CNT30147448Oryza meridionalisMedicago truncatula21.923.9786.89122forward
CNT30311950Oryza meridionalisCamelina sativa22.9817.7586.72128forward
CNT30613842Oryza meridionalisArabis alpina18.1323.7683.17101reverse complement
CNT301326Oryza meridionalisZea mays12.5720.4194.2970forward
CNT30231884Oryza meridionalisAnanas comosus31.2416.5185.63174forward
CNT30625935Oryza meridionalisDaucus carota23.169.0882.17129forward
CNT30346128Oryza meridionalisEragrostis tef20.6519.294.78115forward
CNT30479425Oryza meridionalisArabidopsis halleri29.6228.1687.88165forward
CNT30367748Oryza meridionalisSorghum bicolor16.1623.1492.2290forward
CNT30621990Oryza meridionalisCajanus cajan21.7218.2886.78121forward
CNT30104901Oryza meridionalisOryza longistaminata84.228.9796.59469forward
CNT30120491Oryza meridionalisCitrus clementina26.2141.1387.67146forward
CNT30332036Oryza meridionalisDioscorea rotundata11.312088.8963forward
CNT30101764Oryza meridionalisOryza rufipogon79.1781.9795.69441forward
CNT30576402Oryza meridionalisOryza barthii72.3553.5294.54403forward
CNT30116198Oryza meridionalisOryza nivara21.99.2486.07122forward
CNT30594303Oryza meridionalisEragrostis curvula30.726.6895.32171forward
CNT30175579Oryza meridionalisVigna angularis28.0126.9487.82156forward

Expression of CNT30596276

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLQQAQDKHQRNQASDVVSHDHLTRSLLNITTSKDRYLKGTSQSTAL*

>peptide 2 (33 aa)
GRLQPFNSARKREVKMMIERNQAMHICTTIQEI*

>peptide 3 (63 aa)
GKAATIQFSTQKRSKDDDRKEPGNAYLHNDPRNMMKPQQILCSSRRKINIKETRHLMLFRMTT*

Sequence

>CNT30596276
GGGAAGGCTGCAACCATTCAATTCAGCACGCAAAAGAGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAAGAAATA
TGATGAAACCCCAACAAATCCTATGCTCCAGCAGGCGCAAGATAAACATCAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACCACCTAACCCGATCG
CTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTAGGCCCTGACAGTTTTAGTTCACTTCAGACAGAACT
TATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCTACGTCAGCCTCCTTGAGCTCCTC
CTCAGAGTCGGTATCCTTCATCTTCTTTGCCATCAGGTTCAGGAACTCTGGGAAGTCAATGGTCCCATTGCCATCAGCATCAACCTCGTTGATCATGTCC
TGCAGCTCCGCCTCAGTTGGGTTCTGACCAAGGGACCGCATCACGGTTCCAAGCTCC