« Back to Cucumis melo search


Detailed information on CNT3037982


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 1e-60

BLAST vs NONCODE:
NONSLYT003545, E-value = 2e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Cucumis meloSetaria viridis47.6449.6286.31263forward
CNT30534974Cucumis meloEucalyptus grandis9.7822.2294.4454forward
CNT30545709Cucumis meloIpomoea triloba45.1126.6683.53249forward
CNT30617519Cucumis meloSesamum indicum28.87.9181.76159forward
CNT30379145Cucumis meloManihot esculenta45.8356.2283.4253forward
CNT30487977Cucumis meloOlea europaea15.5833.0890.786forward
CNT30156599Cucumis meloPistacia vera40.5829.7182.59224forward
CNT3097357Cucumis meloSolanum tuberosum47.11381.15260forward
CNT30125031Cucumis meloPhyscomitrium patens22.6417.4683.2125forward
CNT30387589Cucumis meloTriticum turgidum40.9410.8684.07226forward
CNT30560106Cucumis meloActinidia chinensis46.3848.1282.03256forward
CNT30586817Cucumis meloMusa acuminata34.7819.2483.85192forward
CNT3085845Cucumis meloVigna radiata24.8210.4686.86137forward
CNT30234205Cucumis meloBrassica oleracea34.7836.9983.33192forward
CNT30553743Cucumis meloOryza glaberrima46.9234.8685.71259forward
CNT30248464Cucumis meloAvena sativa34.9631.6983.94193forward
CNT30311950Cucumis meloCamelina sativa47.4636.3483.97262forward
CNT3073928Cucumis meloBrassica juncea34.7843.8482.81192forward
CNT3011614Cucumis meloZea mays34.9625.782.9193forward
CNT30607166Cucumis meloGossypium raimondii30.6246.381.07169forward
CNT30231884Cucumis meloAnanas comosus40.9421.4482.3226forward
CNT30216184Cucumis meloKalanchoe fedtschenkoi36.0540.9582.91199forward
CNT30204543Cucumis meloHelianthus annuus16.1240.6485.3989forward
CNT30479425Cucumis meloArabidopsis halleri46.7444.0381.01258forward
CNT30367748Cucumis meloSorghum bicolor43.1261.1883.61238forward
CNT30621990Cucumis meloCajanus cajan22.8319.0388.89126forward
CNT30483255Cucumis meloChara braunii24.0911.9681.95133forward
CNT3026117Cucumis meloPopulus trichocarpa22.8329.3781.75126forward
CNT30120491Cucumis meloCitrus clementina23.9137.1882.58132forward
CNT30332036Cucumis meloDioscorea rotundata33.5158.7379.46185forward
CNT30149356Cucumis meloBrachypodium distachyon42.9310.1584.39237forward
CNT30101815Cucumis meloOryza rufipogon25.3625.8385140forward
CNT30576402Cucumis meloOryza barthii46.9234.485.71259forward
CNT30497675Cucumis meloDigitaria exilis35.1432.5584.02194forward
CNT30116198Cucumis meloOryza nivara37.1415.5381.95205forward
CNT30594303Cucumis meloEragrostis curvula46.9240.4185.71259forward
CNT30175579Cucumis meloVigna angularis24.8223.6687.59137forward
CNT30335796Cucumis meloCynara cardunculus34.4247.7483.16190forward

Expression of CNT3037982

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKPFWSLSNTRKASFSSSSESVSFIFLAIRFRNSGKSMRLKASLNSEI*

Sequence

>CNT3037982
TACCATAAATCATGCAAACAAAGAGATTAAGATAACAGAAAGAACCAACAACTAAAGCTAATAATAAACACCAAAAGAAAAGAAGGGATATTATAGTTGT
CATGGAACATATTTTGACGCTAACCTCTCTCCTTTCCGGTTCTTCTTATTAGCTTCGTTAGGTTCTTGTTCGTGTTTGGTTGGTTTTGTCTCACTTGGCC
ATCATGATTTTTACGAATTCCTCGTAGTTAATCTGGCCATCGCCATCCACGTCAGCCTCACGAATCATCTCATCGACTTCTTCGTCAGTCAATTTCTCGC
CGAGATTTGTCATCACGTGACGGAGTTCAGCTGCAGAAATGAAACCATTTTGGTCCTTGTCGAACACACGGAAGGCTTCCTTCAGTTCCTCCTCTGAATC
AGTGTCTTTCATCTTCCTAGCCATCAGATTCAGGAACTCTGGGAAGTCGATGAGGCTGAAGGCCTCCTTGAACTCGGAGATCTGATCGTCGGTGAGCTGC
TCGGCCATAGTCGTGGGAAGGAAAAAGAAGGAAGGAGAAATGGAAAGGGGAG