« Back to Nicotiana attenuata search


Detailed information on CNT30504265


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7DMP0|CALM2_SOLTU, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Nicotiana attenuataOryza sativa45.576.7685.61139forward
CNT30672686Nicotiana attenuataSetaria viridis66.8933.1282.84204forward
CNT30530065Nicotiana attenuataEucalyptus grandis35.0831.5682.24107forward
CNT30545709Nicotiana attenuataIpomoea triloba37.3812.2192.98114forward
CNT30373447Nicotiana attenuataArabidopsis thaliana45.5722.8284.89139forward
CNT30617482Nicotiana attenuataSesamum indicum45.578.6485.61139forward
CNT30379145Nicotiana attenuataManihot esculenta36.7224.8985.71112forward
CNT30487677Nicotiana attenuataOlea europaea4033.6186.07122forward
CNT30156599Nicotiana attenuataPistacia vera45.5718.4486.33139forward
CNT3097357Nicotiana attenuataSolanum tuberosum42.956.5592.37131forward
CNT30125031Nicotiana attenuataPhyscomitrium patens32.4613.8384.8599forward
CNT30387589Nicotiana attenuataTriticum turgidum202.9391.861forward
CNT30560106Nicotiana attenuataActinidia chinensis37.721.6289.57115forward
CNT30586817Nicotiana attenuataMusa acuminata38.3611.7286.32117forward
CNT3085845Nicotiana attenuataVigna radiata34.758.0986.79106forward
CNT30539591Nicotiana attenuataBrassica napus35.744.5182.57109forward
CNT30234205Nicotiana attenuataBrassica oleracea38.6922.7482.2118forward
CNT30553673Nicotiana attenuataOryza glaberrima30.1612.0688.0492forward
CNT30146219Nicotiana attenuataMedicago truncatula42.9552.8286.26131forward
CNT30311950Nicotiana attenuataCamelina sativa38.3616.2384.62117forward
CNT3073928Nicotiana attenuataBrassica juncea38.6926.9484.75118forward
CNT301326Nicotiana attenuataZea mays61.9755.182.01189forward
CNT30607166Nicotiana attenuataGossypium raimondii37.731.5182.61115forward
CNT30231884Nicotiana attenuataAnanas comosus37.0510.7285.84113forward
CNT30625935Nicotiana attenuataDaucus carota45.99.8587.14140forward
CNT30346128Nicotiana attenuataEragrostis tef37.3819.0384.21114forward
CNT30479425Nicotiana attenuataArabidopsis halleri42.6222.1883.85130forward
CNT30367843Nicotiana attenuataSorghum bicolor22.629.7286.9669forward
CNT30621990Nicotiana attenuataCajanus cajan31.4814.585.4296forward
CNT30596276Nicotiana attenuataOryza meridionalis40.3322.0885.37123forward
CNT30483255Nicotiana attenuataChara braunii38.6910.6181.36118forward
CNT30104901Nicotiana attenuataOryza longistaminata45.578.5984.89139forward
CNT3026117Nicotiana attenuataPopulus trichocarpa22.315.8585.2968forward
CNT30120491Nicotiana attenuataCitrus clementina28.224.2391.8686forward
CNT30332036Nicotiana attenuataDioscorea rotundata36.0734.9283.64110forward
CNT30149356Nicotiana attenuataBrachypodium distachyon38.365.0182.05117forward
CNT30101815Nicotiana attenuataOryza rufipogon30.1616.9786.9692forward
CNT30576402Nicotiana attenuataOryza barthii38.3615.5484.62117forward
CNT30497675Nicotiana attenuataDigitaria exilis38.3619.6382.05117forward
CNT30116198Nicotiana attenuataOryza nivara26.896.2184.1582forward
CNT30594303Nicotiana attenuataEragrostis curvula45.5721.6883.45139forward
CNT30175579Nicotiana attenuataVigna angularis25.2513.390.9177forward
CNT30335796Nicotiana attenuataCynara cardunculus34.7526.6386.79106forward
CNT3039761Nicotiana attenuataMarchantia polymorpha32.79983100forward

Expression of CNT30504265

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVPLPSASTSFIMSWSSASVGFCPNDLITVPSSLVVMQ

>peptide 2 (88 aa)
MNVWSFFSVKKVNCRRGKSLGHHDLNKLIIVNLSITIDIGLPNHFINFFISKLLTKVQKLWEVNGSITISIHFIYHVLELSFSWVLSQ*

Sequence

>CNT30504265
ATGAATGTTTGGTCTTTCTTCAGTGTTAAAAAGGTAAACTGCAGAAGAGGGAAATCACTTGGCCATCATGACCTTAACAAACTCATCATAGTTAATTTGT
CCATCACCATCGACATCGGCCTCCCTAATCATTTCATCAACTTCTTCATCAGTAAGCTTCTCACCAAGGTTCAAAAACTCTGGGAAGTCAATGGTTCCAT
TACCATCAGCATCCACTTCATTTATCATGTCCTGGAGCTCAGCTTCAGTTGGGTTCTGTCCCAATGACCTCATCACCGTCCCAAGCTCCTTAGTTGTAAT
GCAAC