« Back to Triticum turgidum search


Detailed information on CNT30387589


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 2e-53

BLAST vs NONCODE:
NONSLYT003545, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674570Triticum turgidumSetaria viridis16.2462.4890.24338forward
CNT30534974Triticum turgidumEucalyptus grandis3.4129.2295.7771forward
CNT30545709Triticum turgidumIpomoea triloba11.0524.6381.3230forward
CNT30378266Triticum turgidumArabidopsis thaliana4.1325.2287.2186forward
CNT30379145Triticum turgidumManihot esculenta11.251.7885.41233forward
CNT30487977Triticum turgidumOlea europaea5.1441.1583.18107forward
CNT30504265Triticum turgidumNicotiana attenuata2.932091.861forward
CNT30156599Triticum turgidumPistacia vera11.0530.582.61230forward
CNT3096793Triticum turgidumSolanum tuberosum11.0536.6882.61230forward
CNT30179421Triticum turgidumSecale cereale20.5297.0590.4427forward
CNT30560106Triticum turgidumActinidia chinensis10.4840.9882.57218forward
CNT30234205Triticum turgidumBrassica oleracea8.9936.0386.63187forward
CNT30553743Triticum turgidumOryza glaberrima10.8630.4291.59226forward
CNT30146219Triticum turgidumMedicago truncatula5.0942.7489.62106forward
CNT30248464Triticum turgidumAvena sativa23.5580.4686.12490forward
CNT30311950Triticum turgidumCamelina sativa10.4830.2483.94218forward
CNT3080440Triticum turgidumBrassica juncea8.9934.3186.63187forward
CNT3011614Triticum turgidumZea mays9.6126.6391200forward
CNT30607166Triticum turgidumGossypium raimondii8.0245.7585.63167forward
CNT30216184Triticum turgidumKalanchoe fedtschenkoi9.5640.9585.93199forward
CNT30204543Triticum turgidumHelianthus annuus10.4399.0984.33217forward
CNT30346128Triticum turgidumEragrostis tef11.2439.0782.91234forward
CNT30479425Triticum turgidumArabidopsis halleri10.4837.282.57218forward
CNT30367748Triticum turgidumSorghum bicolor15.9585.3587.65332forward
CNT30120491Triticum turgidumCitrus clementina6.336.985.5131forward
CNT3037982Triticum turgidumCucumis melo10.8640.9484.07226forward
CNT30332036Triticum turgidumDioscorea rotundata9.2360.9585.42192forward
CNT30148143Triticum turgidumBrachypodium distachyon9.1336.8288.42190forward
CNT30101764Triticum turgidumOryza rufipogon7.2127.8885.33150forward
CNT30576528Triticum turgidumOryza barthii16.1950.3788.72337forward
CNT30497675Triticum turgidumDigitaria exilis9.3732.7288.72195forward
CNT30594303Triticum turgidumEragrostis curvula10.4834.0188.99218forward
CNT30335796Triticum turgidumCynara cardunculus9.1347.7483.68190forward

Expression of CNT30387589

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MRTARAAASVARRRDPRDGRGEGRRGALTISVLVEEAEGLLELGDLVVGELIRHAAGAVDRGEGGGERASTGRAQARTRMGAADARANRERPGAFCG

>peptide 2 (85 aa)
MTWRSSAAEMKPFWSLSNTLKASLSSSSESVSFILRAISIDFIDHVLELSLRWVLPQRTHDCSQLLGGDATCRYIQPTPGSNTEH*

>peptide 3 (43 aa)
MPPARWIEAREAASERARAGRRRGRGWARRTREQTERGRERSVA

>peptide 4 (57 aa)
MVQHKNSSHSRTICVQTNLAARSFKAESISYIASSNVHEIPYSTTWRDFSLSPGIST*

>peptide 5 (72 aa)
MFMKSPIVLHGGIFLYLQGSLHELNYLNRKKCDKKQASGTQRQSTVNNHESFRRSCSRSNSGRDRDAIRKIK*

>peptide 6 (44 aa)
MVNPEDKRRVHIIIIYSPLGRTRQRRGSASGHAQIRAGSTAGRR*

>peptide 7 (44 aa)
MKKYTTNGPNSNQDTPGRTQVHIKHKRSGNTLENIAGIASSDPF*

>peptide 8 (56 aa)
MSQAEVDEKIYYKRAKQQSGYTREDTSSHKTQEVWKHTGEHSRNCVVRSVLAATAR*

>peptide 9 (76 aa)
MPRSGPDLPPGGANSTRQGGRRGQWQCAPRVRRRASRDGEIRGTGGGKGGGARSPSPSLSKRLKASLNSAIWSSVS*

>peptide 10 (84 aa)
MQCTILLLSSEHLGRSSFGHHDLDELLVVDLAITVDVGFTDHLVHLLVGELLTEVRHDVAELSSRDETVLVLVEHPEGLLELLL*

>peptide 11 (44 aa)
MSWSSASVGFCPSERMTVPSSLVVMQPVDTYNQLQDQTQNTDCA*

Sequence

>CNT30387589
AAAGAGTCGAAGAAATACGAAACACCGGCTTTCCATTGATGCTAGATGAGTCAAGCAGAAGTTGATGAAAAAATATACTACAAACGGGCCAAACAGCAAT
CAGGATACACCAGGGAGGACACAAGTTCACATAAAACACAAGAGGTCTGGAAACACACTGGAGAACATAGCAGGAATTGCGTCGTCCGATCCGTTTTAGC
AGCTACAGCTAGGTAGGATGCTTAACTGGAAATCGATCAAATAAGAGTTGCATCTTAAACTAATATGCAATGCACAATTCTCCTCCTGTCTTCGGAGCAT
TTGGGTCGGAGCTCATTTGGCCATCATGACCTTGACGAACTCCTCGTAGTTGATCTGGCCATCACCGTCGACGTCGGCTTCACGGATCATCTCGTCCACC
TCCTCGTCGGTGAGCTTCTCACCGAGGTTCGTCATGACGTGGCGGAGCTCAGCAGCAGAGATGAAACCGTTTTGGTCCTTGTCGAACACCCTGAAGGCCT
CCTTGAGCTCCTCCTCTGAGTCAGTGTCCTTCATCTTGCGGGCCATCAGCATCGACTTCATTGATCATGTCCTGGAGCTCAGCCTCCGTTGGGTTCTGCC
CCAGCGAACGCATGACTGTTCCCAGCTCCTTGGTGGTGATGCAACCTGTAGATACATACAACCAACTCCAGGATCAAACACAGAACACTGATTGTGCTTA
AAACAAATTAAATTTTCTTTAGAAAACAGAAACCATCGCTGTTAACTACAAATCAAATCAGGAGATCAACTTATGAAGAAAAAGAAACAATAGTTGCTTA
TTGCCAGTAATTGATAAGGTCTAAATGAGTTTGAAAGCAGTAAGGAATATCCACGCAGGGTGCTAATACTGAGAATATCCACGCATGGTACAATACTGAG
AATATCTTGCATAGGTTCAAATGGGAAGGTGCATATCTAGATTTATCCTCAGTGATAAGTTCACACAATAACATCAAAGTAGATTAATGCAACAGTAAAT
TCGCTGTGAAAAGTTCAAACCCAGATTTATCCTCAGTGGGTAAGTTCACACAATAACATCAAATAGATTAACGCAACAGTAAATTCGCTGTGGAAAGTTC
AAACACAGATTTATCCTCGCTGATAAGTTCACACAACAAGATCAAAGTAGATTAATGCAACAGTAAATTCATTATGGAAAGTTCAAACCAAGAGAGCTCT
ACACGGTTATTAACCAAACTTTTACTACATTATAGTACTCTACATGACTACTAGGAAAACCTCAACCAAATCATGGTACAACACAAGAATTCCAGCCACA
GTAGAACCATATGTGTTCAGACAAACTTAGCCGCCAGATCATTCAAAGCCGAATCAATTTCCTATATCGCATCATCAAATGTTCATGAAATCCCCTATAG
TACTACATGGCGGGATTTTTCTCTATCTCCAGGGATCTCTACATGAATTAAACTACCTAAATCGAAAAAAGTGTGATAAAAAGCAAGCTAGTGGTACACA
GCGACAGTCCACGGTCAACAATCACGAGTCGTTCAGACGAAGTTGCTCTAGAAGCAACAGTGGGCGCGATCGCGACGCGATCCGGAAAATAAAATAAAAC
CTAGACGGCGACGCGAAATGGTCAACCCGGAAGATAAGCGTCGCGTGCACATCATCATCATCTACTCGCCACTAGGCCGCACACGACAGCGACGCGGTTC
GGCCAGCGGCCATGCCCAGATCCGGGCCGGATCTACCGCCGGGCGGCGCTAATTCGACGCGACAGGGTGGGCGCAGGGGGCAGTGGCAATGCGCACCGCG
CGTGCGGCGGCGAGCGTCGCGCGACGGAGAGATCCGAGGGACGGGAGGGGGGAAGGGAGGAGGGGCGCGCTCACCATCTCCGTCCTTGTCGAAGAGGCTG
AAGGCCTCCTTGAACTCGGCGATCTGGTCGTCGGTGAGCTGATCCGCCATGCCGCCGGCGCGGTGGATCGAGGCGAGGGAGGCGGCGAGCGAGCGAGCAC
GGGCCGGGCGCAGGCGCGGACGAGGATGGGCGCGGCGGACGCGAGAGCAAACAGAGAGAGGCCGGGAGCGTTCTGTGGCGT