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Detailed information on CNT30607166


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 2e-34

BLAST vs NONCODE:
NONSLYT003545, E-value = 4e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672188Gossypium raimondiiSetaria viridis47.434.1287.28173forward
CNT30530065Gossypium raimondiiEucalyptus grandis22.7424.4885.5483forward
CNT30545709Gossypium raimondiiIpomoea triloba47.1218.4284.88172forward
CNT30617519Gossypium raimondiiSesamum indicum47.128.5684.3172forward
CNT30379145Gossypium raimondiiManihot esculenta47.6738.6788.51174forward
CNT30487677Gossypium raimondiiOlea europaea37.5337.7484.67137forward
CNT30504265Gossypium raimondiiNicotiana attenuata31.5137.782.61115forward
CNT30156599Gossypium raimondiiPistacia vera47.6723.0884.48174forward
CNT3097357Gossypium raimondiiSolanum tuberosum46.858.5585.38171forward
CNT30387589Gossypium raimondiiTriticum turgidum45.758.0285.63167forward
CNT30560106Gossypium raimondiiActinidia chinensis47.6732.7188.51174forward
CNT30586817Gossypium raimondiiMusa acuminata47.417.3384.39173forward
CNT30234205Gossypium raimondiiBrassica oleracea47.433.3384.39173forward
CNT30553743Gossypium raimondiiOryza glaberrima47.423.2886.71173forward
CNT30248464Gossypium raimondiiAvena sativa45.7527.4287.43167forward
CNT30311950Gossypium raimondiiCamelina sativa46.323.4483.43169forward
CNT3073928Gossypium raimondiiBrassica juncea47.439.585.55173forward
CNT3011614Gossypium raimondiiZea mays46.322.585.21169forward
CNT30231884Gossypium raimondiiAnanas comosus36.4412.6286.47133forward
CNT30216184Gossypium raimondiiKalanchoe fedtschenkoi37.2627.9887.5136forward
CNT30346128Gossypium raimondiiEragrostis tef30.6818.789.29112forward
CNT30479425Gossypium raimondiiArabidopsis halleri46.328.8484.02169forward
CNT30367843Gossypium raimondiiSorghum bicolor47.1224.2383.72172forward
CNT30621990Gossypium raimondiiCajanus cajan26.0314.3590.5395forward
CNT30483255Gossypium raimondiiChara braunii29.329.6283.18107forward
CNT3026117Gossypium raimondiiPopulus trichocarpa28.4924.2484.62104forward
CNT3037982Gossypium raimondiiCucumis melo46.330.6281.07169forward
CNT30332036Gossypium raimondiiDioscorea rotundata46.0353.3386.9168forward
CNT30149356Gossypium raimondiiBrachypodium distachyon47.677.4686.78174forward
CNT30576402Gossypium raimondiiOryza barthii47.422.9786.71173forward
CNT30497675Gossypium raimondiiDigitaria exilis47.429.0387.86173forward
CNT30116198Gossypium raimondiiOryza nivara46.312.885.21169forward
CNT30594303Gossypium raimondiiEragrostis curvula46.326.3786.39169forward
CNT30335796Gossypium raimondiiCynara cardunculus46.8542.9683.63171forward
CNT3049908Gossypium raimondiiCucumis sativus21.929.7483.7580forward
CNT3039761Gossypium raimondiiMarchantia polymorpha28.229.2783.5103forward

Expression of CNT30607166

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SKESTKHKNIDVNNPALLNKKAEQTSIILRFGPPNNANLSALFLSSFFFKPQF*

Sequence

>CNT30607166
GTTCGAAAGAAAGCACAAAGCATAAAAATATTGACGTTAACAACCCAGCACTACTGAACAAAAAAGCAGAGCAAACAAGCATAATACTAAGGTTCGGTCC
ACCAAATAATGCAAACTTATCTGCCCTGTTCCTTTCTTCCTTTTTTTTTAAACCCCAATTTTAAATCCTGGTTATAGTTGGAGAGGTCCTTTACTTGGCC
ATCATGACTTTGACGAACTCCTCGTAGTTGATCTGCCCATCACCATCAACATCAGCTTCGCGGATCATCTCGTCGACTTCCTCATCTGTAAGCTTTTCAC
CAAGGTTTGTCATGACATGGCGCAGCTCGGCTGCAGATATGAACCCATTCTGATCCTTGTCAAAC