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Detailed information on CNT30545709


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y052|CALM_EUPCH, E-value = 7e-72

BLAST vs NONCODE:
NONSLYT003545, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672188Ipomoea trilobaSetaria viridis31.858.5883.84297forward
CNT30373447Ipomoea trilobaArabidopsis thaliana14.8822.8284.17139forward
CNT30617519Ipomoea trilobaSesamum indicum33.7315.6885.08315forward
CNT30379145Ipomoea trilobaManihot esculenta28.6959.5684.7268forward
CNT30487677Ipomoea trilobaOlea europaea16.9243.5386.71158forward
CNT30504265Ipomoea trilobaNicotiana attenuata12.2137.3892.98114forward
CNT30156599Ipomoea trilobaPistacia vera32.8740.7287.95307forward
CNT3097357Ipomoea trilobaSolanum tuberosum33.5115.6589.14313forward
CNT30125031Ipomoea trilobaPhyscomitrium patens19.4925.4280.77182forward
CNT30387589Ipomoea trilobaTriticum turgidum24.6311.0581.3230forward
CNT30560106Ipomoea trilobaActinidia chinensis33.1958.2788.39310forward
CNT30586817Ipomoea trilobaMusa acuminata20.5619.2484.38192forward
CNT3085845Ipomoea trilobaVigna radiata20.7714.8186.6194forward
CNT30234205Ipomoea trilobaBrassica oleracea20.6637.1983.94193forward
CNT30553743Ipomoea trilobaOryza glaberrima33.0841.5983.17309forward
CNT30146219Ipomoea trilobaMedicago truncatula10.0637.987.2394forward
CNT30248464Ipomoea trilobaAvena sativa20.1330.8783.51188forward
CNT30311950Ipomoea trilobaCamelina sativa33.7343.6984.13315forward
CNT3073928Ipomoea trilobaBrassica juncea20.6644.0685.49193forward
CNT3014113Ipomoea trilobaZea mays14.9929.9884.29140forward
CNT30607166Ipomoea trilobaGossypium raimondii18.4247.1284.88172forward
CNT30231884Ipomoea trilobaAnanas comosus27.5224.3882.88257forward
CNT30216184Ipomoea trilobaKalanchoe fedtschenkoi17.2433.1385.09161forward
CNT30204543Ipomoea trilobaHelianthus annuus11.4648.8684.11107forward
CNT30346128Ipomoea trilobaEragrostis tef34.0553.0980.5318forward
CNT30479425Ipomoea trilobaArabidopsis halleri33.8353.9281.96316forward
CNT30367748Ipomoea trilobaSorghum bicolor25.0560.1584.19234forward
CNT30621990Ipomoea trilobaCajanus cajan17.9925.3887.5168forward
CNT30596276Ipomoea trilobaOryza meridionalis13.3822.4484125forward
CNT3057123Ipomoea trilobaAmborella trichopoda6.8521.9285.9464forward
CNT3026117Ipomoea trilobaPopulus trichocarpa14.7832.1784.78138forward
CNT30120491Ipomoea trilobaCitrus clementina23.5561.9789.09220forward
CNT3037982Ipomoea trilobaCucumis melo26.6645.1183.53249forward
CNT30332036Ipomoea trilobaDioscorea rotundata19.8158.7384.32185forward
CNT30149356Ipomoea trilobaBrachypodium distachyon25.0510.0385.04234forward
CNT30101815Ipomoea trilobaOryza rufipogon20.4535.2483.77191forward
CNT30576402Ipomoea trilobaOryza barthii33.0841.0483.17309forward
CNT30496859Ipomoea trilobaDigitaria exilis17.9927.4183.93168forward
CNT30116198Ipomoea trilobaOryza nivara21.8415.4580.88204forward
CNT30594303Ipomoea trilobaEragrostis curvula33.0848.2185.76309forward
CNT30175579Ipomoea trilobaVigna angularis20.7733.5187.11194forward
CNT30335796Ipomoea trilobaCynara cardunculus20.3447.7488.42190forward
CNT3039763Ipomoea trilobaMarchantia polymorpha17.6726.9281.82165forward

Expression of CNT30545709

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MFGKSLGHHNLNKLLVVNLTIAINIRLPNHLINFFISKLLPEICHHMAKLSCRDESILILVKNSERLLQLLLRISILHLPGHEI*

>peptide 2 (33 aa)
MRFRNSGKSIVPLPSASTSFIISWSSASLNSEI*

>peptide 3 (60 aa)
SSSLWNIPPMTSLFIKRRPTVWQQQQKRGNPAPLRRKKATSNVTTIWCNNCICLYKDNIV*

Sequence

>CNT30545709
AATCCAGTAGTCTATGGAATATACCACCAATGACTAGCCTCTTCATCAAAAGGAGGCCAACTGTTTGGCAGCAGCAGCAGAAGAGAGGAAATCCTGCACC
TCTTAGAAGAAAAAAGGCCACTTCAAATGTGACAACTATTTGGTGCAACAACTGCATTTGTTTATATAAAGACAACATTGTATAGTCAACTAGATTAACC
CCCAAAACAAAAAGAAGGTAACAACTTGAGATTACAGGAGTGAGAGTCAGAATACAAATTAAATTATCAGAAGAGGGGGGAAAGCATTCCACCACTCTTG
TGACACAGAATTACATTCGCTCAAGTTCTGATCTTAAGCCATCCAAAATAAAAGGAAAATGATAAGTAGCAATCCATTATACTAGCTGTGACCCTGTCCA
TCCAATTTTGGCAGATGTTTGGGAAATCACTTGGCCATCATAACCTTAACAAACTCCTCGTAGTTAATTTGACCATCGCCATCAACATCCGCCTCCCTAA
TCATCTCATCAACTTCTTCATCAGTAAGCTTCTCCCCGAGATTTGTCATCACATGGCGAAGCTCAGCTGCAGAGATGAATCCATTCTGATCCTTGTCAAA
AACTCTGAACGCCTCCTTCAGCTCCTCCTCAGAATCAGTATCCTTCATCTTCCTGGCCATGAGATTTAGAAACTCCGGAAAATCAATTGTTCCATTACCA
TCAGCATCAACTTCATTTATCATATCCTGGAGCTCAGCTTCCTTGAACTCGGAGATCTGATCGTCGGTCAGTTGATCCGCCATTTCTCCTTGCAGAAACT
ACGAACAGAGCGGAGGAGGGGAGCGGAGGGAGAGGCGGAGAGGCGGTTCTGGAATCGGGAGAGTGGATGAATCGTGAGGTGCCGGAGGTTCGTTCAACTT
TATATCACCTCTGAGATGTATATACTGACAAGAG