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Detailed information on CNT3036109


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-19

BLAST vs NONCODE:
NONPOPT001747, E-value = 3e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513329Cucumis meloJuglans regia13.5721.9686.52141forward
CNT30374725Cucumis meloArabidopsis thaliana14.0533.4982.88146forward
CNT30402245Cucumis meloBeta vulgaris11.8421.3985.37123forward
CNT30502928Cucumis meloNicotiana attenuata12.0335.4181.6125forward
CNT30221234Cucumis meloHordeum vulgare11.9320.782.26124forward
CNT30562751Cucumis meloActinidia chinensis8.2820.6783.7286forward
CNT30236263Cucumis meloBrassica oleracea13.4728.8183.57140forward
CNT30244083Cucumis meloAvena sativa11.9325.3182.26124forward
CNT30219415Cucumis meloKalanchoe fedtschenkoi8.8529.4982.6192forward
CNT3067780Cucumis meloLeersia perrieri9.9121.5583.5103forward
CNT30213985Cucumis meloHelianthus annuus22.0443.1381.66229forward
CNT30478099Cucumis meloArabidopsis halleri14.3421.0785.23149forward
CNT30360911Cucumis meloLactuca sativa13.0929.8984.56136forward
CNT30370757Cucumis meloOryza glumipatula11.932682.26124forward
CNT3031825Cucumis meloTheobroma cacao13.6728.3484.51142forward
CNT3023899Cucumis meloPopulus trichocarpa27.8244.3980.97289forward
CNT30328621Cucumis meloAsparagus officinalis11.3639.681.36118forward
CNT30120621Cucumis meloCitrus clementina22.4359.981.55233forward
CNT30147934Cucumis meloBrachypodium distachyon11.9332.5580.65124forward
CNT30581265Cucumis meloEchinochloa crusgalli11.9323.881.45124forward
CNT30604352Cucumis meloOryza punctata11.9321.5382.26124forward

Expression of CNT3036109

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MNKLTFTESLQSKYLRVWLKRRRFHFRALKSRPNYISSHILRQILIQRVQIILQILSRFPQPKRIKSIVPYQ

>peptide 2 (33 aa)
MARRACLISANCNTAFFSGSSAKPKGSKNLPPG*

>peptide 3 (55 aa)
MAETASISLPRSQISSQLYLQPHSSPNFDPTSPNHTANTQPVSPTQTDQIHSPLPS

Sequence

>CNT3036109
AGTTTTTGATTTGTGTCGTAACACGATATATAATATAATTTAACATACGAATCGCGAAGCAAAGTACTACTTACAGCTCAGGATCACATAACTCAGTCAA
GTTTTATACAAACTAGAAAGAGACAATAATGAAGAGGAGTAGTGGAGAATTAAGGGGCGCTTAAGAAGAGAAGTTGTCAATAATAGTAGTGTGGAGAGGG
TCACTGAGATGGGTAGCCCAGTTGTTGAGTGGACCTTTGCCGGTGACAGCAGCTTGAACCGCAAACCCAAGGAACGCAACCATGGCTAGGCGTGCATGCT
TGATCTCAGCCAATTGTAACACTGCTTTCTTTTCTGGGTCCTCAGCCAAACCCAAAGGGTCGAAAAACTTGCCTCCTGGGTAGGATGAACCTTCCACTAA
TTCTACCTGAATTAATAATTCAGTACATGATCAAATCATTAATCCTTAAAGTTTTGTTTATTATGATATAGATCTTATCAACTTTGGAACCTATTTAATA
CATCTTTACATTTGAACTTGAACTTTTAATAGGTAACGATGTCATCGTTGTATTAAGAAATTTGTAACAAATTAGTTCATAATCAACAAAAAGAATATCA
AATTATTTCTTTAAATCAAATGAACACCCACAACTAAATATAATGAAAGACCTTCAGTATATAAATTAATAAATAAATAAAAGGAAGTCGGTGACCAATT
GTAATTTAACATTTCTTAACTGAAACGAAAATATACTCACTTTTCCGGCGTCTTGCCAAGTAACCCCGGTGAGCCATTCAACAGAGAGAGCACCGAGTGT
AGCCAGCATTGCCCACCGTCCATGAATAAGCTCACATTCACGGAATCTCTGCAATCCAAATACCTCCGTGTATGGCTGAAACGGCGTCGATTTCACTTCC
GCGCTCTCAAATCTCGTCCCAATTATATCTCCAGCCACATTCTTCGCCAAATTTTGATCCAACGAGTCCAAATCATACTGCAAATACTCAGCCGGTTTCC
CCAACCCAAACGGATCAAATCCATAGTCCCCTACCAAGC