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Detailed information on CNT30580858


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375654Echinochloa crusgalliArabidopsis thaliana29.9536.5779.1177forward
CNT30282946Echinochloa crusgalliChenopodium quinoa32.3218.7879.06191forward
CNT30485914Echinochloa crusgalliOlea europaea24.718.2384.93146forward
CNT3067780Echinochloa crusgalliLeersia perrieri20.6425.5297.54122forward
CNT30213985Echinochloa crusgalliHelianthus annuus22.1724.6783.21131forward
CNT30360911Echinochloa crusgalliLactuca sativa16.4121.3283.5197forward
CNT30120689Echinochloa crusgalliCitrus clementina24.212.5782.52143forward

Expression of CNT30580858

Peptides detected in this lncRNA

>peptide 1 (51 aa)
VVYVVVVINLLLTKKLTMVHHLKTMCTSECIDSSLVHILQMTKSQQQQLSY*

>peptide 2 (98 aa)
MIDAWIMGRAGLRGSSEGVEDGGVERVAEVCGPVVERALAGGGGLHGEAEECDHGEAGVLDLRQLQPLLLLRVRRQAQRVEVGAARVQPLLRVRRPVHQ

>peptide 3 (61 aa)
MVVWSGSLRCVAQLLSGPLPVAAACTAKPRNATMARRACLISASCSRSFFSGSDARPSGSK*

Sequence

>CNT30580858
TTGTTGTGTACGTAGTAGTGGTAATTAACCTTCTTCTAACGAAGAAATTAACCATGGTTCATCACCTCAAGACGATGTGTACAAGTGAATGCATTGATTC
ATCACTGGTTCATATATTACAAATGACCAAGTCCCAGCAGCAGCAGCTCTCCTATTAACGCGCGCGACCTCCATTAACAAAGGACTAGATCGGATCCATC
TTCCCATACCCTCTCACTCAATCATCACAAAATGATTACATCCATCTCCAGCTGATGATAGAGATCACGGTTAATTAATTCAAGAACAGCTGATGATCGA
CGCATGGATAATGGGCCGGGCGGGCTTAAGAGGATCCTCCGAAGGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGTGTGGCCCAGTTGTTGAG
CGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAATGCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTC
TTCTCCGGGTCCGACGCCAGGCCCAGCGGGTCGAAGTAGGAGCCGCCCGGGTACAGCCTCTTCTCCGGGTACGACGACCCGTCCACCAGCT