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Detailed information on CNT30120689


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 4e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Citrus clementinaOryza sativa12.5722.5981.82143forward
CNT30520407Citrus clementinaSetaria italica11.4220.882.31130forward
CNT30640430Citrus clementinaNymphaea colorata11.4228.3285.38130forward
CNT30513329Citrus clementinaJuglans regia13.6224.1489.03155forward
CNT30281605Citrus clementinaChenopodium quinoa12.1321.1384.06138forward
CNT30402245Citrus clementinaBeta vulgaris10.2820.3585.47117forward
CNT30502928Citrus clementinaNicotiana attenuata12.0438.8184.67137forward
CNT30221234Citrus clementinaHordeum vulgare11.4221.782.31130forward
CNT30387274Citrus clementinaTriticum turgidum10.1925.8982.76116forward
CNT30562744Citrus clementinaActinidia chinensis26.8949.2879.74306forward
CNT30236263Citrus clementinaBrassica oleracea12.5729.4281.82143forward
CNT30144767Citrus clementinaMedicago truncatula12.1320.7584.78138forward
CNT30244083Citrus clementinaAvena sativa11.4226.5382.31130forward
CNT3067780Citrus clementinaLeersia perrieri9.1421.7684.62104forward
CNT30213985Citrus clementinaHelianthus annuus11.7825.2484.33134forward
CNT30338963Citrus clementinaEragrostis tef12.5721.5780.42143forward
CNT30478099Citrus clementinaArabidopsis halleri13.1821.2281.33150forward
CNT30620951Citrus clementinaCajanus cajan29.0931.8381.87331forward
CNT30360911Citrus clementinaLactuca sativa12.4831.2184.51142forward
CNT30370757Citrus clementinaOryza glumipatula12.5729.9881.82143forward
CNT3031825Citrus clementinaTheobroma cacao12.3928.1488.65141forward
CNT30328621Citrus clementinaAsparagus officinalis11.4243.6282.31130forward
CNT30147934Citrus clementinaBrachypodium distachyon11.4234.1280.77130forward
CNT30580858Citrus clementinaEchinochloa crusgalli12.5724.282.52143forward
CNT30604352Citrus clementinaOryza punctata12.5724.8382.52143forward
CNT30725306Citrus clementinaLupinus angustifolius9.7544.2282.88111forward

Expression of CNT30120689

Peptides detected in this lncRNA

>peptide 1 (75 aa)
PSTGGYTRNLRDEGVKNGCVKRIAQVGSPVVERAFSGDNSLDSEAKECNHGKAGVLDLCQLKAAKPRGSKNFPPG*

>peptide 2 (33 aa)
MEVVAPGMMILQLTLPEKCQRFDNLFFIFYFLI*

>peptide 3 (40 aa)
MNELTLTEPLQTKDFSVRLKRRGLHVRGLNPRPNNIASRVL

>peptide 4 (38 aa)
MPMPMPKRPHNSLINYKTLLDTKFMRPLKFLAPLIKAA*

Sequence

>CNT30120689
CCAAGTACTGGAGGCTACACCAGAAATCTAAGAGATGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCCCAGTTGTTGAGAGGG
CCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCCAAGGAATGCAACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAAGGCGGCCAAGCCCAG
AGGATCAAAAAACTTTCCTCCCGGGTAGAGTCTCTTCTCCGGGTCAAGCTCTGAGTTTCTTTGGAACTCAATGTAGCCAATTACCAAAACCTCAATCCAT
ATCAACGTTGTTATTGAGAATGGAAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCTACCTGAAAAATGTCAACGGTTCGATAATTTATTTTTT
ATTTTTTATTTTTTAATTTAAAGGAGATAGATACAAGAAACTGCACTCACAAAACATTGAGCCTTATCCTACACTGAAATATTAGTACTTTGAATTTAAA
TTACCGTGAGTGCAAAGGCCATTCATAGCCAGTCGACCTATGCCTATGCCTATGCCTAAAAGGCCTCATAATTCATTAATTAATTATAAAACCCTTTTAG
ATACTAAGTTTATGCGACCCTTAAAATTCTTAGCTCCTTTGATCAAGGCTGCTTAGTTTCTTTTATAATGTCATCTAATAACCACTAATTATAAGCCCAA
ATTTAGTTCATAGAGAGAAACGTCAACTCTAGCAAGGCCAATAATCTATTCAATCACTAACTCGAGATCTGTTAGGGGCCTAAAGCGCATGACCTTCTCC
CCACAAAAATAAACTGAGAAATAAGAATGACTATTTACATTTAGTACCCTTGATGTATGGTTTTTATGTTTTGAACCCAATAAGTTCTATCATTTTCCAT
TATGAACCCCCAATATTAGTGTAAATACGTACCTTGCCAGCGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAGGGCACCGAGAGTAGCCAACA
TGGCCCAACGTCCATGAATGAGCTCACACTCACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTGGACTGCATGTCAGAGGCCTC
AATCCTCGTCCCAATAATATCGCCAGCCGGGTTCTTAG