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Detailed information on CNT3020107


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Citrullus lanatusOryza sativa11.120.0684.25127forward
CNT30520407Citrullus lanatusSetaria italica11.120.3285.04127forward
CNT30640430Citrullus lanatusNymphaea colorata11.127.6781.1127forward
CNT30513329Citrullus lanatusJuglans regia12.0621.586.23138forward
CNT30375654Citrullus lanatusArabidopsis thaliana11.1926.4580.47128forward
CNT30402245Citrullus lanatusBeta vulgaris11.5422.9686.36132forward
CNT30502928Citrullus lanatusNicotiana attenuata10.433.7182.35119forward
CNT30221234Citrullus lanatusHordeum vulgare11.121.283.46127forward
CNT30562751Citrullus lanatusActinidia chinensis7.5220.6783.7286forward
CNT30244083Citrullus lanatusAvena sativa11.125.9285.04127forward
CNT3067780Citrullus lanatusLeersia perrieri921.5584.47103forward
CNT30338969Citrullus lanatusEragrostis tef11.120.5283.46127forward
CNT30370757Citrullus lanatusOryza glumipatula11.126.6284.25127forward
CNT30147934Citrullus lanatusBrachypodium distachyon11.133.3383.46127forward
CNT30581265Citrullus lanatusEchinochloa crusgalli11.124.3884.25127forward
CNT30604352Citrullus lanatusOryza punctata11.122.0585.04127forward

Expression of CNT3020107

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MARRACLISANCRMNLPLVLPEIFTSSHH*

Sequence

>CNT3020107
AAGCAATATAGAATCACCTTAATAATGATTAAAAAAAGAATGAACAGAGTTTGGAAACTAAACTAATAACAGTTTTGATTTGTGTGGGGAGCAGGATATA
TAATTTCAGATACGAATCTCGAAGCAAAGTAGTTACAGCTCAGGATGACATTACAAGGTCAAGTTCTTTTTTTACAAACTAGAGAGAAGACAATAATGAA
CACAAAGTAGTGGAGGAAAATAAAGAGGAGCTTAAGAAGAAGAAGAAGAGAAGTTGTCAATAATAGTGGTGTGGAGAGGGTCACTGAGATGGGTAGCCCA
GTTGTTGAGTGGGCCTTTGCCAGTAACAGCAGCCTGAACTGCGAACCCAAGGAAGGCAACCATGGCTAGGCGAGCGTGCTTGATCTCGGCCAACTGTAGG
ATGAACCTTCCACTAGTTCTACCTGAAATTTTTACCTCATCCCATCATTAATTTTTCAAGTTTGTGTTTAGAAGGTTTATGAACTTCAAATTCAGATTTT
TCCACCTAAACTTCAACCTTCCCACCTTCCTTTAATTATGTGTTTAATACGTTTTTTTACATATTTAATATTAAGCTTTTAGTTTAAAGTTTTTTAAAAA
ATACCTCTTAGTCAAAAGAATGAAAACCCAAAGACTTATTAGACACGTTTTTAACGTTTTGATCTATTGAAAACAAAATTGAAAGTCTATGGGTCTTTTA
GATATTTCAAAATTTATGGACTAAATAGATACAAATTTAAAAATTTAACAACTAATATTGTAATTTAACCAAACATTCTTTCCGATTTAGTTAATTATTA
TTGGACCTTAATTTTGAGATTATTACATTATTGAGTTATTATATTTTTAGTAGTTTAGTCCCTAAGCAAGGAAACAAATTTATTCATATTCTTCCAAAAT
ATGAACAATTTAATCCTACTATGAAAAATCCAATCATTTCATTTTTCTAAAAGAAAAATTAAATGTCAGTTATTATTGTATAGTGACCTAAGCTTTAATG
GTTATAATATCTGATCCATAACTAGTTTACAGGTGTATATGTAAAAGAATTTTCATTAAATCATAATAATATTTTTACGACTAGATTGTTACAAAACTTA
AAGTATAAGACTATGTTCTTTCACATTAAAGTGTAGATATTGAA