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Detailed information on CNT30562752


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Actinidia chinensisOryza sativa10.5921.1789.55134forward
CNT30672010Actinidia chinensisSetaria viridis21.546.1883.82272forward
CNT30520322Actinidia chinensisSetaria italica23.7226.7183.33300forward
CNT30640430Actinidia chinensisNymphaea colorata10.5929.1988.06134forward
CNT30513329Actinidia chinensisJuglans regia13.3626.3288.17169forward
CNT30374725Actinidia chinensisArabidopsis thaliana11.332.883.22143forward
CNT30281593Actinidia chinensisChenopodium quinoa10.1223.5782.81128forward
CNT30382112Actinidia chinensisManihot esculenta11.4627.5186.21145forward
CNT30485914Actinidia chinensisOlea europaea12.7320.184.47161forward
CNT30708158Actinidia chinensisGlycine max20.7131.685.11262forward
CNT30289853Actinidia chinensisTriticum aestivum12.4920.2386.71158forward
CNT30221234Actinidia chinensisHordeum vulgare25.353.4280.94320forward
CNT30387274Actinidia chinensisTriticum turgidum8.1422.9984.47103forward
CNT30236263Actinidia chinensisBrassica oleracea19.215079.01243forward
CNT30436840Actinidia chinensisAegilops tauschii7.2722.7284.7892forward
CNT30244083Actinidia chinensisAvena sativa12.4932.2487.97158forward
CNT30659938Actinidia chinensisTriticum dicoccoides8.5420.1589.81108forward
CNT30262014Actinidia chinensisBrassica rapa17.0847.0679.63216forward
CNT30452520Actinidia chinensisSaccharum spontaneum28.0623.6881.97355forward
CNT30132672Actinidia chinensisLolium perenne26.2559.580.12332forward
CNT30229721Actinidia chinensisAnanas comosus24.1112.9983.61305forward
CNT3067780Actinidia chinensisLeersia perrieri8.5422.5991.67108forward
CNT30213985Actinidia chinensisHelianthus annuus17.4741.6284.16221forward
CNT30680853Actinidia chinensisTriticum urartu10.4323.6687.88132forward
CNT30720416Actinidia chinensisTriticum spelta12.9627.2982.32164forward
CNT30340460Actinidia chinensisEragrostis tef23.7935.4185.38301forward
CNT30478099Actinidia chinensisArabidopsis halleri12.0921.6484.31153forward
CNT30596550Actinidia chinensisOryza meridionalis13.9121.6784.09176forward
CNT30370789Actinidia chinensisOryza glumipatula23.3221.4483.05295forward
CNT3031825Actinidia chinensisTheobroma cacao11.7829.7480.54149forward
CNT3023899Actinidia chinensisPopulus trichocarpa24.5847.7780.39311forward
CNT30328621Actinidia chinensisAsparagus officinalis10.9946.6484.17139forward
CNT30120621Actinidia chinensisCitrus clementina7.9125.7186100forward
CNT30148661Actinidia chinensisBrachypodium distachyon14.9440.5683.6189forward
CNT30581232Actinidia chinensisEchinochloa crusgalli13.4423.8485.88170forward
CNT30496270Actinidia chinensisDigitaria exilis18.0223.181.58228forward
CNT30116923Actinidia chinensisOryza nivara18.8128.6182.77238forward
CNT30604352Actinidia chinensisOryza punctata10.5923.2688.81134forward
CNT30556732Actinidia chinensisPanicum hallii13.4421.7986.47170forward

Expression of CNT30562752

Peptides detected in this lncRNA

>peptide 1 (35 aa)
WQITFLLKQSNIIFLQDTTIHSYKFSPLIQVKGQT*

>peptide 2 (66 aa)
MSSHSLNRCNPKTSLYGWNGVDFTSAVSNRVPITSPARFFARFWSSESRSNCKYSAGLPNPNGSNP*

>peptide 3 (75 aa)
MVVWRGSLKWVTQLLRGPLPVTAAWTAKPRNPTMARRACLISASWRVAFFSGSENLPPGYSRFSSSSSAFLWNSM*

>peptide 4 (96 aa)
MAGTASTSPPRSRIGSQSRRRPGSSPGSGPANRDRTASTPRACPTRTGRTRNRPPDYRRGTPGPWLPGTTAAGPYPDPTSPSSARLSSCRIRNEPGP

>peptide 5 (87 aa)
GKLHFCLNSQISYFYKTQPFIRTSFHLSFKSRGKRNSSRENVVNNGSVEGVAQVGDPVVEGALAGDGSLDCEAEEPDHGEAGVLDLR*

Sequence

>CNT30562752
TGGCAAATTACATTTCTGCTTAAACAGTCAAATATCATATTTTTACAAGACACAACCATTCATTCGTACAAGTTTTCACCTCTCATTCAAGTCAAGGGGC
AAACGTAACAGCTCAAGAGAAAACGTTGTCAATAATGGTAGTGTGGAGGGGGTCGCTCAAGTGGGTGACCCAGTTGTTGAGGGGGCCCTTGCCGGTGACG
GCAGCTTGGACTGCGAAGCCGAGGAACCCGACCATGGCGAGGCGGGCGTGCTTGATCTCCGCTAGCTGGAGGGTGGCCTTCTTCTCAGGGTCGGAGAATT
TGCCTCCGGGGTACAGCCGCTTCTCCTCGTCGAGCTCGGCGTTCCTCTGGAACTCTATGTAGCCGATCACAAGGACCTCGATCCATATCAGCGTGGTTAT
GGAGAAGGGGAGGGGTTGGCCCAGGTAGGATGACCCTTCTATGAGCTCCACCTGAATAACAAACCATTCATAACGCATTTCAACTATAAAATATGACTAG
AGTGAGCGTGCTACATCTCATTATTGCGGCCGCCGCCACCACCACATAACCACCTTTAGTAACACTATCACCACCATTATTTAGGTAGACTTTTAAATGA
TTGATTTTAGAATATAACAATCTAAAGAAAAAATTATAAATAATAAGTTTTACACAACTTATTTAATTCAGTATCTAAATATTTATCAAATAATTTCTTA
ACTTAAAAAAATCAGTATTTAATTTTGAGTATTTAAGTATTTAATTTTCAGTTTTATCTTATAGCCTCCAAGAGTCATGCAATTATGTTCAAGTTGATGA
GTCTGCAAAATTATGAATCCCCCACAGTATAAAATATAAGTACCTTTCCCGCGTCTTGCCAAGTGATACCGGTGAGCCACTCGACAGTGATTGCGCCGAG
AGTGGCCAGCATGGCCCACCTTCCATGAATGAGCTCGCACTCCCTGAACCGCTGTAACCCGAAAACCTCGCTGTATGGCTGGAACGGCGTCGACTTCACC
TCCGCGGTCTCGAATCGGGTCCCAATCACGTCGCCGGCCAGGTTCTTCGCCAGGTTCTGGTCCAGCGAATCGAGATCGAACTGCAAGTACTCCGCGGGCT
TGCCCAACCCGAACGGGTCGAACCCGTAATCGCCCACCAGACTACCGTCGAGGTACTCCGGGGCCTTGGCTCCCGGGTACCACAGCGGCCGGTCCGTACC
CGGACCCGACTTCGCCTTCTTCGGCGCGGCTTTCTTCTTGCCGAATCCGAAACGAGCCTGGACCT