Detailed information on CNT30520609


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 1e-61

BLAST vs NONCODE:
NONBRAT002959, E-value = 2e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671994Setaria italicaSetaria viridis35.1360.2899.74384forward
CNT30554380Setaria italicaOryza glaberrima20.0419.8293.61219forward
CNT3067780Setaria italicaLeersia perrieri11.1625.5297.54122forward

Expression of CNT30520609

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

>peptide 2 (39 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGWAES

>peptide 3 (56 aa)
MKQFWCTYVYIHTLPASCQVTPVSHSTERAPRVASMAQRPWMSSHSRKRWRPKTSL*

>peptide 4 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 5 (52 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSG*

Sequence

>CNT30520609
GTACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACT
ATCGGATCGATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTA
ATTAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCT
GAGGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATC
TCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTAGGACGACCCGTCCACAAGCTCAACCTGCCAGCCATCAATAACGTTCAGGTTAGACGCTTGCATAA
GGATGGAATGAAACAATTTTGGTGCACATATGTATATATACATACCTTGCCGGCGTCCTGCCAGGTGACGCCGGTGAGCCACTCGACGGAGAGGGCGCCG
AGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGA
CGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTCTTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGG
CTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACCCGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAG
ACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCCGCCGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCG
CCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGGGCTGAGAGCG