Detailed information on CNT30244332


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640430Avena sativaNymphaea colorata18.3332.4688.59149forward
CNT30485914Avena sativaOlea europaea22.2622.682.32181forward
CNT30179479Avena sativaSecale cereale34.4440.4691.07280forward
CNT30221234Avena sativaHordeum vulgare19.826.8896.89161forward
CNT30387274Avena sativaTriticum turgidum34.8163.1791.52283forward
CNT30562744Avena sativaActinidia chinensis17.2222.5487.14140forward
CNT3013737Avena sativaZea mays12.9222.5389.52105forward
CNT3067780Avena sativaLeersia perrieri13.7823.4398.21112forward
CNT30213985Avena sativaHelianthus annuus15.2523.3584.68124forward
CNT30338963Avena sativaEragrostis tef18.3322.4795.97149forward
CNT30596509Avena sativaOryza meridionalis22.3911.9793.41182forward
CNT30370757Avena sativaOryza glumipatula18.3331.2497.32149forward
CNT30328621Avena sativaAsparagus officinalis11.3230.8789.1392forward

Expression of CNT30244332

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRPFCGAGSARRVPRNELAAAATDEAMAILTPACPPRPLRGFV

>peptide 2 (40 aa)
TRHTKPNHVRTRTTRSSILQPSLQNRIHCSTTETSDRPRA*

>peptide 3 (61 aa)
MVVCSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCRVSFFSGSAARPSGSK*

>peptide 4 (56 aa)
SLVIQNQTTFVHGLRVRPSCSRAYRTVYTARRPRLATDRALKRSPRCRRWWCAAGR*

>peptide 5 (34 aa)
HSSYKTKPRSYTDYAFVHLAAELTEPYTLLDDRD*

Sequence

>CNT30244332
TCACTCGTCATACAAAACCAAACCACGTTCGTACACGGACTACGCGTTCGTCCATCTTGCAGCCGAGCTTACAGAACCGTATACACTGCTCGACGACCGA
GACTAGCGACCGACCGCGCGCTTAAGAGGAGCCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGAGTGGGCCC
TTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGGGTTTCCTTCTTCTCAG
GGTCCGCCGCGAGGCCCAGCGGGTCGAAGTAGGAGCCGCCGGGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCGGAACCTCTGGAG
GCCGAACACCTCGGCGTAGGGCTGGAACGGGGTGGACTTGACGTCGGCGTCCTCGAACCGGGTTCTGGGCCAGGTTCTGGTCAAGGGAGTCCACGTCGTA
CTGCAGGTACTCCGCGGGCTTCCCGAGGCCGAAGGGGTCGAACCCGTAGTCGCCGACCAGCGTCCCGTCAAGGTACTCGGGCGCCTGCGCGCCGGGGAAC
CACAGCGGCCGGTCGGTGGTCGGTGCGACCTTGGACGCCTTCTTCGGCGGCGCCTTCTTCTTGCCGAAGCCGAACCGCGCCACGATGCGCCCGTTCTGCG
GCGCTGGGTCTGCCAGACGGGTTCCGAGGAACGAGCTCGCCGCGGCGGCCACCGACGAAGCCATGGCTATTCTCACTCCTGCTTGTCCTCCCCGGCCTTT
GCGTGGCTTTGTG