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Detailed information on CNT30653963


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39613|CYPH_CATRO, E-value = 8e-105

BLAST vs NONCODE:
NONATHT003174, E-value = 3e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Rosa chinensisOryza sativa16.714182.01139forward
CNT30671343Rosa chinensisSetaria viridis26.0837.7482.95217forward
CNT30640933Rosa chinensisNymphaea colorata22.3624.3886.56186forward
CNT30517653Rosa chinensisJuglans regia56.7324.6685.17472forward
CNT30702610Rosa chinensisQuercus lobata41.8366.6788.79348forward
CNT30376622Rosa chinensisArabidopsis thaliana27.2828.4580.18227forward
CNT30618033Rosa chinensisSesamum indicum34.1335.1580.28284forward
CNT3019668Rosa chinensisCitrullus lanatus13.2225.9488.18110forward
CNT3071229Rosa chinensisQuercus suber40.6245.893.79338forward
CNT30632225Rosa chinensisVigna unguiculata37.6264.5486.58313forward
CNT30201798Rosa chinensisPisum sativum18.8767.3882.8157forward
CNT30507180Rosa chinensisNicotiana attenuata23.3228.6182.47194forward
CNT30710775Rosa chinensisGlycine max34.3850.8989.86286forward
CNT3043301Rosa chinensisPrunus dulcis35.741.6593.94297forward
CNT30167177Rosa chinensisPistacia vera59.7469.6187.12497forward
CNT30638631Rosa chinensisCapsicum annuum20.0722.1584.43167forward
CNT3090362Rosa chinensisSolanum tuberosum28.8550.3187.5240forward
CNT30303130Rosa chinensisTriticum aestivum30.1777.9584.46251forward
CNT30569495Rosa chinensisActinidia chinensis30.6545.0586.27255forward
CNT3084160Rosa chinensisVigna radiata35.5834.4688.51296forward
CNT30145071Rosa chinensisMedicago truncatula30.5354.6282.68254forward
CNT30442485Rosa chinensisAegilops tauschii40.1438.5283.23334forward
CNT30240409Rosa chinensisAvena sativa46.2753.2585.19385forward
CNT30667711Rosa chinensisTriticum dicoccoides42.1951.7782.34351forward
CNT30312502Rosa chinensisCamelina sativa27.2864.1281.5227forward
CNT3075586Rosa chinensisBrassica juncea13.2220.7989.09110forward
CNT30597524Rosa chinensisFraxinus excelsior9.9839.1587.9583forward
CNT30140197Rosa chinensisLolium perenne54.6956.9584.4455forward
CNT3010238Rosa chinensisZea mays43.5136.6483.15362forward
CNT30128639Rosa chinensisCorymbia citriodora17.0728.888.03142forward
CNT30624974Rosa chinensisDaucus carota36.4241.6286.14303forward
CNT30686383Rosa chinensisTriticum urartu42.9147.4184.03357forward
CNT30722480Rosa chinensisTriticum spelta18.7527.5180.77156forward
CNT30364404Rosa chinensisSorghum bicolor32.3338.5481.78269forward
CNT30369645Rosa chinensisOryza glumipatula15.1424.8580.95126forward
CNT30155236Rosa chinensisPrunus persica35.733.4593.6297forward
CNT30429993Rosa chinensisPapaver somniferum22.618.6580.85188forward
CNT30706413Rosa chinensisPrunus avium17.1943.3393.71143forward
CNT3022997Rosa chinensisPopulus trichocarpa32.9351.8982.48274forward
CNT3035490Rosa chinensisCucumis melo35.760.3785.52297forward
CNT30100563Rosa chinensisOryza rufipogon34.7430.9478.55289forward
CNT30175854Rosa chinensisVigna angularis24.7661.6888.35206forward
CNT30724737Rosa chinensisLupinus angustifolius16.8320.7189.29140forward

Expression of CNT30653963

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VNTIYKSLRSEPRRQTTATRPQYHNKNWRETTTTHLRNRNLKFEKI*

>peptide 2 (40 aa)
STRYIKVSDQNQDDKPRPQGPNTIIKTGERQQRPIYETEI*

>peptide 3 (31 aa)
MFLTTSRPSTTWPNTTCLPSSHSVLAVQTKN*

Sequence

>CNT30653963
GTCAACACGATATATAAAAGTCTCAGATCAGAACCAAGACGACAAACCACGGCCACAAGGCCCCAATACCATAATAAAAACTGGAGAGAGACAACAACGA
CCCATCTACGAAACCGAAATTTAAAATTCGAGAAAATTTAAACATAGACAGAAGGAAAGGAGGACCCCATCATAACATAAACGACGATCGCCGATCGGAA
GATCCGATAAACGACACGCCGTCTAAGAGAGCTGGCCACAGTCAGCGACCACAACAGGCTTGGCGGTCCTTCCAGAGCTAGATCCGACCTTCTCGATGTT
CTTGACGACATCAAGACCCTCGACGACCTGGCCGAACACGACGTGCTTGCCGTCGAGCCACTCGGTCTTAGCAGTACAGACGAAGAACTGAGATCCGTTG
GTGCCGGGGCCGGCATTCGCCATGGAGAGGATGCCGGGGCCGGTGTGCTTCTTGACGAAGTTCTCGTCGGCGAACTTGGCGCCGTAGATCGACTCGCCTC
CGGTGCCGTTTCCGGCGGTGAAGTCACCTCCCTGGCACATGAAGCCGGGGATCACACGGTGGAAGGACGATCCCTTGTAGTGGAGGGGCTTGCCGGAGCG
GCCGACGCCCTTCTCGCCGGTGCAGAGAGCACGGAAGTTCTCGGCGGTGCGGGGGGTGGTGTCGGCGTAGAGCTCCATGACGATGCGGCCGGCCGGCTGG
CCCCCGATCGTCATGTCGAAGAACACCTTAGGGTTTTGAGCGGCCATGGATGCGAGGAATCGAGAGAGAGGTAGGGTTTCAGAGAATTTGAGGAAATAGG
GTTTGTGATTTGCGCCGCTTTGCCTCCGGTGC