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Detailed information on CNT30722480


BLAST search results

BLAST vs Swiss-Prot:
sp|P86548|SBTXB_SOYBN, E-value = 5e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194493Triticum speltaSecale cereale30.342584.88172forward
CNT30301234Triticum speltaTriticum aestivum27.8748.6296.84158forward
CNT30568322Triticum speltaActinidia chinensis30.1645.682.46171forward
CNT30441614Triticum speltaAegilops tauschii41.828.7394.51237forward
CNT30240409Triticum speltaAvena sativa33.8626.5689.06192forward
CNT30667711Triticum speltaTriticum dicoccoides43.5636.43100247forward
CNT30140197Triticum speltaLolium perenne33.3323.6586.77189forward
CNT3010238Triticum speltaZea mays26.9815.4985.62153forward
CNT30653963Triticum speltaRosa chinensis27.5118.7580.77156forward
CNT30128639Triticum speltaCorymbia citriodora23.8127.3888.15135forward
CNT30624974Triticum speltaDaucus carota26.9821.0283.01153forward
CNT30686175Triticum speltaTriticum urartu41.2730.5994.44234forward
CNT30364838Triticum speltaSorghum bicolor30.3434.3384.88172forward
CNT30100563Triticum speltaOryza rufipogon28.2217.1391.88160forward
CNT30575409Triticum speltaOryza barthii35.9832.8590.2204forward
CNT30175854Triticum speltaVigna angularis12.721.5690.2872forward

Expression of CNT30722480

SRR9114152: 1378.09 RPKM

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAAGHRSSGQKSPPKTLLNQPRRSHRTDKGKTRHDTRLSYLDRRHGTRGDDDRRPAGGRI*

>peptide 2 (29 aa)
MRPAGAPPTVMSKNTLGLAISPGSDGLGF*

Sequence

>CNT30722480
AGCCAACGAGCACAAATTATGGATAATTCATAGCGGAGTTCATCTCATTCAAACAGTAAGATAGCAGCAGACACAGGAAGATAACCATGGCCGCCGGACA
CAGATCCAGCGGCCAAAAGAGTCCACCTAAAACCCTCCTAAACCAACCACGGAGATCTCATCGGACGGACAAGGGGAAGACACGACACGACACACGACTC
TCTTATTTAGATCGACGACACGGGACACGGGGCGACGACGACAGGCGACCGGCGGGCGGACGGATCTAGAGCTGGCCGCAGTCGGCGATGACGACTTGCT
TGGAGCAGCTGCCCTTGTAGTGCAGTGGCTTGCCGCTCTTGCCGACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCCACCGTCCGCGGCACCGC
GTCCTTGTACAGCTCCATCACGATGCGCCCGGCCGGCGCGCCGCCGACGGTCATGTCGAAGAACACCCTCGGGTTGGCCATCTCGCCGGGATCGGACGGG
CTAGGGTTTTGAGATGGGGATTTCTGTGGGGATTGGATTGGAGTGGATTTCCTTTGGCTTCGGGCTC