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Detailed information on CNT30364404


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 3e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Sorghum bicolorOryza sativa9.7420.0689.7168forward
CNT30671343Sorghum bicolorSetaria viridis17.6221.3995.93123forward
CNT30517653Sorghum bicolorJuglans regia30.811.2382.33215forward
CNT30702610Sorghum bicolorQuercus lobata24.2132.3882.84169forward
CNT3071229Sorghum bicolorQuercus suber39.1136.9983.15273forward
CNT30632225Sorghum bicolorVigna unguiculata26.538.1483.24185forward
CNT30710754Sorghum bicolorGlycine max24.0764.6284.52168forward
CNT30167177Sorghum bicolorPistacia vera27.3626.7581.15191forward
CNT3090362Sorghum bicolorSolanum tuberosum18.4827.0481.4129forward
CNT30303130Sorghum bicolorTriticum aestivum36.8279.8186.77257forward
CNT30569495Sorghum bicolorActinidia chinensis23.528.9882.93164forward
CNT3084160Sorghum bicolorVigna radiata27.5122.3584.38192forward
CNT30442485Sorghum bicolorAegilops tauschii34.8128.0388.89243forward
CNT30240409Sorghum bicolorAvena sativa44.2742.7487.06309forward
CNT30667711Sorghum bicolorTriticum dicoccoides44.2745.5886.08309forward
CNT3075586Sorghum bicolorBrassica juncea24.6432.5181.98172forward
CNT30140197Sorghum bicolorLolium perenne44.2738.6785.44309forward
CNT3010238Sorghum bicolorZea mays44.2731.2895.79309forward
CNT30653963Sorghum bicolorRosa chinensis38.5432.3381.78269forward
CNT30624974Sorghum bicolorDaucus carota27.3626.2484.29191forward
CNT30686175Sorghum bicolorTriticum urartu44.2740.3987.7309forward
CNT30706413Sorghum bicolorPrunus avium18.3438.7982.81128forward
CNT30100456Sorghum bicolorOryza rufipogon10.8923.190.7976forward
CNT30175854Sorghum bicolorVigna angularis27.5157.4984.9192forward

Expression of CNT30364404

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MINKRLNSDHHSDHHHLIQIEANRKRDGTQMKNWEPLVLGPALAMESTPGAVWLRTNFSSGNLSP*

>peptide 2 (30 aa)
MDSPPVPLPRVKSPPWHMNCGMTRWKVEPL*

>peptide 3 (34 aa)
ELAMEQDAHDMAHGTRSMKPNLSSHSINALSWIS*

Sequence

>CNT30364404
GAACTTGCAATGGAACAAGACGCACATGACATGGCACATGGAACAAGAAGCATGAAACCGAATCTCAGTTCTCATAGCATTAATGCATTATCCTGGATCT
CATAACATATAACTGGTGATGAAACACGAAGTAAGCAGAGGCGCCATGGGATTCGGAGATCCACACCTACACCGCTAGATTAAACCGCGAGCGACACAGA
CAGACGCACATGATAAATAAACGACTCAACTCAGACCACCACTCAGATCACCATCATCTTATTCAGATCGAAGCAAACCGGAAACGGGACGGGACGCAGA
TGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGCACCCCGGGGGCCGTGTGGTTGCGCACGAACTTCTCGTCGGGGAACTTGTC
GCCGTAGATGGACTCGCCTCCGGTCCCGTTGCCCCGGGTGAAGTCGCCGCCCTGGCACATGAACTGCGGGATGACGCGGTGGAAGGTGGAGCCCTTGTAG
TGGAGCGGCTTCCCGGACTTCCCCACGCCCTTCTCGCCCGTGCACAGCGCGCGGAAGTTCTCGGCCGTCTTGGGCACCTCGTTCGCGTACAGCTCCATCA
CGATCCGCCCCGCCGCCGCGCCGCCGACCGTCATGTCGAAGAAGACGCGCGGGTTCGCCATCGGGATCCGAAGGTAGCTAGGGTTTGGGAGAGAGGGT