« Back to Capsicum annuum search


Detailed information on CNT30638631


BLAST search results

BLAST vs Swiss-Prot:
sp|P21568|CYPH_SOLLC, E-value = 3e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702610Capsicum annuumQuercus lobata17.6425.4884.21133forward
CNT30376622Capsicum annuumArabidopsis thaliana23.3422.0682.95176forward
CNT3019668Capsicum annuumCitrullus lanatus12.221.785.8792forward
CNT3071229Capsicum annuumQuercus suber27.7228.3281.34209forward
CNT30632225Capsicum annuumVigna unguiculata26.5341.2481200forward
CNT30201798Capsicum annuumPisum sativum11.6737.7785.2388forward
CNT30507180Capsicum annuumNicotiana attenuata65.1272.4281.67491forward
CNT3043301Capsicum annuumPrunus dulcis25.4626.9383.85192forward
CNT30167187Capsicum annuumPistacia vera38.4642.6578.62290forward
CNT3090187Capsicum annuumSolanum tuberosum33.8251.186.27255forward
CNT30301234Capsicum annuumTriticum aestivum12.228.3184.7892forward
CNT30569495Capsicum annuumActinidia chinensis17.7723.6785.07134forward
CNT3084160Capsicum annuumVigna radiata26.5323.2882200forward
CNT30240409Capsicum annuumAvena sativa29.5830.8479.82223forward
CNT30312502Capsicum annuumCamelina sativa11.825.1486.5289forward
CNT30597524Capsicum annuumFraxinus excelsior13.447.6485.15101forward
CNT30140197Capsicum annuumLolium perenne34.0832.1780.16257forward
CNT30653963Capsicum annuumRosa chinensis22.1520.0784.43167forward
CNT30624974Capsicum annuumDaucus carota40.1941.6280.2303forward
CNT30364838Capsicum annuumSorghum bicolor18.0427.1582.35136forward
CNT30430128Capsicum annuumPapaver somniferum26.2624.2684.85198forward
CNT30706413Capsicum annuumPrunus avium19.7645.1585.91149forward
CNT3022997Capsicum annuumPopulus trichocarpa40.9858.5278.64309forward
CNT3035490Capsicum annuumCucumis melo37.2757.1182.56281forward
CNT30175854Capsicum annuumVigna angularis21.2247.983.12160forward
CNT30724737Capsicum annuumLupinus angustifolius31.0334.6284.62234forward

Expression of CNT30638631

Peptides detected in this lncRNA

>peptide 1 (30 aa)
GNLLSYLIVVVLRLKHKLVQAKPIPITAKP*

Sequence

>CNT30638631
TGGAAATCTATTATCTTATTTAATTGTAGTAGTCTTAAGATTAAAACATAAACTGGTACAAGCCAAACCAATACCAATTACAGCAAAACCCTAGACCCTT
CAACCCGACCCAACCCAACCAAACAGTAAACATAGATTAAAATTAAAAACAAAGGCCTAAAACGGCGACTCAAATATTAGGACTGATAATAACACTAGAT
CATCATCATCAAGGGTCCATCAGATCTAGCAGAGTTGACCACAGTCAGCAATCACAACAGGCTTAGAGCACCTTCCAGAGCTGGATCCAACAGCTTCAGC
CTTCTTAATCACATCAAATCCTTCAACAACCTGACCAAAAACAACGTGCTTTCCATCAAGCCATTCAGTCTTAGCAGTGCAGATGAAGAATTGTGAACCG
TTGGTTCCAGGTCCGGTGTGCTTCCTCTTAAAGTTTTCATCAGCAAACTTAGCGCCGTAAATCGATTCTCCTCCAGTACCGTTTCCGGCGGTGAAATCAC
CTCCTTGACACATGAACCCTGGGATCACACGGTGGAAGGTGGAGCCTTTGTAGTGCAAAGGCTTACCCATCCTTCCGACGCCCTTCTCGCCGGTGCAGAG
TGCACGGAAGTTTTCCGCCGTCTTAGGAACATCGTTGGCGAACAGCTCCATCACGACGCGTCCGGCCGGTTGGCCGCCGATGGTGAGGTCAAAGAAAACC
TTTGGATTTGCCATTCTCTTTTTTCTCTCTAGAAATTTCTCAAGCTTACTGGGT