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Detailed information on CNT30376622


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42406|CP18D_ARATH, E-value = 5e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632225Arabidopsis thalianaVigna unguiculata15.2925.1582.79122forward
CNT30507180Arabidopsis thalianaNicotiana attenuata21.0524.7882.74168forward
CNT30167177Arabidopsis thalianaPistacia vera38.2242.7279.34305forward
CNT30638631Arabidopsis thalianaCapsicum annuum22.0623.3482.95176forward
CNT3090362Arabidopsis thalianaSolanum tuberosum39.4766.0482.22315forward
CNT30145071Arabidopsis thalianaMedicago truncatula16.7928.8283.58134forward
CNT30312502Arabidopsis thalianaCamelina sativa31.4570.989.64251forward
CNT30613544Arabidopsis thalianaArabis alpina34.4647.9179.64275forward
CNT30653963Arabidopsis thalianaRosa chinensis28.4527.2880.18227forward
CNT30706413Arabidopsis thalianaPrunus avium15.0436.3682.5120forward
CNT3022997Arabidopsis thalianaPopulus trichocarpa21.332.281.76170forward

Expression of CNT30376622

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVTTLEVFPESDPTFSIAFTTSKPLTTCPNTTCLPSNHDVLSVQMKN*

>peptide 2 (50 aa)
MLLDKVLVLELSTVDRFTTGSVLGGEITSLTHESGNHTVEDRSFEVKWLT*

>peptide 3 (35 aa)
MGVPLRLMSKKTLGFDIFWEIWKREIDEEDCESDDD

>peptide 4 (40 aa)
LLLVHRSKNTKKQLGKLIIISNPRKHKRVLLQTLKRKLKP*

Sequence

>CNT30376622
GTTACTACTTGTTCATAGAAGCAAAAACACAAAGAAGCAATTGGGTAAGCTCATAATTATTTCAAACCCCAGAAAACACAAAAGGGTTTTGTTACAAACT
CTGAAACGAAAACTCAAACCCTAAACAGAATAATCCATTAAGGTAAGAGGAAGAACAACCGAAAGCAAAAGACACCATTATTACTCATAAAGATCAAAGT
CTCTCACTTTCTCACTCAGATCTAAGAAAGCTGACCACAATCAGTGATGGTAACGACTTTGGAAGTCTTTCCAGAATCAGATCCAACTTTCTCAATCGCC
TTCACGACGTCCAAGCCTTTAACAACTTGTCCAAACACAACGTGCTTACCATCTAACCACGACGTCTTATCGGTACAGATGAAGAACTGAGATCCGTTAG
TGTTAGGACCAGAGTTAGCCATTGAGAGAATCCCAGCTCCTGTATGCTTCTTGATAAAGTTCTCGTCCTTGAACTTAGCACCGTAGATCGATTCACCACC
GGTTCCGTTCTTGGCGGTGAAATCACCTCCTTGACACATGAATCCGGGAATCACACGGTGGAAGATCGATCCTTTGAAGTGAAGTGGCTTACCTAGCTTT
CCCATTCCTTTCTCGCCGGTACAGAGAGCACGGAAATTCTCCGCCGTGTTTGGGGTTGTATCAGCGAAAAGCTCCATCTCGATCCGTCCGATGGGAGTAC
CGCTGAGACTCATGTCGAAGAAAACTCTAGGGTTCGACATCTTTTGGGAGATTTGGAAGAGAGAAATCGATGAAGAAGATTGTGAAAGTGATGATGAC