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Detailed information on CNT30369645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Oryza glumipatulaOryza sativa36.4954.5799.46185forward
CNT30671041Oryza glumipatulaSetaria viridis25.4435.3487.6129forward
CNT30710775Oryza glumipatulaGlycine max25.0522.684.25127forward
CNT30301234Oryza glumipatulaTriticum aestivum14.222.1597.2272forward
CNT30552830Oryza glumipatulaOryza glaberrima47.3462.8399.17240forward
CNT30140197Oryza glumipatulaLolium perenne23.6715.0285120forward
CNT3010238Oryza glumipatulaZea mays25.4413.0684.5129forward
CNT30653963Oryza glumipatulaRosa chinensis24.8515.1480.95126forward
CNT30100563Oryza glumipatulaOryza rufipogon75.9441.2299.22385forward
CNT30575409Oryza glumipatulaOryza barthii61.3450.0899.36311forward
CNT30175854Oryza glumipatulaVigna angularis1421.2688.7371forward
CNT30550616Oryza glumipatulaOryza brachyantha32.7427.7690.96166forward

Expression of CNT30369645

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTTGLAVLPPRDPTFSMALTTSMPSTTRPNTTCSPCSAAACRSCPRPSRLCRARGSSPPSA

>peptide 2 (45 aa)
MGDLISPTRLELIKRLTPPPPPPYLGTRRLKTTDTGERRRGTAQI*

Sequence

>CNT30369645
AGAAAATCCAGGGATCCCAAATGTTCTCGATTTTTTTCTCATTGATTGATAGCGATATCATAGAAGCAGCGACACGAATTAAGATTTAAAACCAACCACA
AGAAGGATCGCAGATCCAACTCCACCGAATCGATCCAAGAACTCCGCCTAATCCAACCAAACCATGGGCGATCTCATCTCACCAACACGACTCGAACTCA
TAAAAAGACTAACACCACCACCACCTCCTCCTTATTTAGGGACTCGACGACTCAAGACGACTGATACTGGCGAAAGGCGAAGGGGAACAGCACAGATCTA
GGAGAGCTGGCCGCAGTCGGCGATGACGACCGGCTTGGCGGTGCTCCCGCCGCGGGATCCCACCTTCTCGATGGCCTTGACGACGTCCATGCCGTCGACG
ACGCGGCCGAACACGACGTGCTCCCCTTGTAGTGCAGCGGCTTGCCGCTCTTGCCCACGCCCTTCTCGCCTGTGCAGAGCGCGCGGAAGTTCTCCGCCGT
CCGCGGC