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Detailed information on CNT30507180


BLAST search results

BLAST vs Swiss-Prot:
sp|P21568|CYPH_SOLLC, E-value = 8e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376622Nicotiana attenuataArabidopsis thaliana24.7821.0582.74168forward
CNT3019668Nicotiana attenuataCitrullus lanatus13.5721.786.9692forward
CNT3071229Nicotiana attenuataQuercus suber29.9427.5182.76203forward
CNT3043301Nicotiana attenuataPrunus dulcis23.622.4480.62160forward
CNT30167187Nicotiana attenuataPistacia vera41.4541.3281.14281forward
CNT30638631Nicotiana attenuataCapsicum annuum72.4265.1281.67491forward
CNT30569495Nicotiana attenuataActinidia chinensis23.327.9281.01158forward
CNT30312502Nicotiana attenuataCamelina sativa12.2423.4590.3683forward
CNT30613544Nicotiana attenuataArabis alpina19.1722.6586.15130forward
CNT30597524Nicotiana attenuataFraxinus excelsior14.0144.8183.1695forward
CNT30653963Nicotiana attenuataRosa chinensis28.6123.3282.47194forward
CNT30624974Nicotiana attenuataDaucus carota44.141.0781.27299forward
CNT30430128Nicotiana attenuataPapaver somniferum35.9929.983.2244forward
CNT30706413Nicotiana attenuataPrunus avium21.6844.5582.99147forward
CNT3023361Nicotiana attenuataPopulus trichocarpa28.3229.3182.81192forward
CNT3035490Nicotiana attenuataCucumis melo33.0445.5382.14224forward
CNT30724737Nicotiana attenuataLupinus angustifolius34.5134.6280.34234forward

Expression of CNT30507180

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMILCSVTACRTFRRLSLRYRVLGSYPPFSELHR*

>peptide 2 (40 aa)
MLFNEILVGEFGAVDRFTAGTISSSEITSLTHKSRNHTVK*

Sequence

>CNT30507180
CCCGACACAGTAAGCCCGAAACCCGACCCACAATAAGCTAAGGAAAAAGCTAAAAAAGAAAACGAAAACCAGCAGATCAGTACACTGGGATCACATAGTT
AACTAGTTTAGATCATCATTAACATTAATTAATACGATTAATAATCTAGGAGAGTTGACCACAGTCAGCAATCACAACGGGCTTCGAGCACCTGCCGGAG
CTAGATCCAACGGCTTCCACTTTCTTAATCACGTCCATTCCTTCAATAACTTGACCAAAAACCACGTGTTTTCCATCGAGCCACTCGGTTTTGGCCGTAC
AGATGAAAAACTGCGATCCGTTAGTTCCAGGTCCAGTATGCTTTTTAACGAAATTCTCGTCGGCGAATTTGGCGCCGTAGATCGATTCACCGCCGGTACC
ATTTCCAGCAGTGAAATCACCTCCTTGACACATAAATCCAGGAATCACACGGTGAAATGATGATCCTTTGTAGTGTAACGGCTTGCCGGACTTTCCGACG
CCTTTCTCTCCGGTACAGAGTGCTCGGAAGTTATCCGCCGTTTTCGGAACTACATCGTTGAACAACTCCATCACCACACGGCCGGTCGGTTGACCGCCGA
CGGTAAGGTCGAAGAAAACCTTAGGATTTGCCATCTCTCACTCTCTTGTAGAAATTTCTGTGGAATTTTTAAGCTGTG