Detailed information on CNT30686383


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 5e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702610Triticum urartuQuercus lobata34.5349.8182.69260forward
CNT3071229Triticum urartuQuercus suber45.0245.9383.78339forward
CNT30710754Triticum urartuGlycine max32.89583.81247forward
CNT30303130Triticum urartuTriticum aestivum36.6585.7197.83276forward
CNT30442485Triticum urartuAegilops tauschii53.6546.698.76404forward
CNT30254078Triticum urartuAvena sativa39.7147.3991.97299forward
CNT30140197Triticum urartuLolium perenne64.4160.785.77485forward
CNT3010238Triticum urartuZea mays58.744.7489.14442forward
CNT30653963Triticum urartuRosa chinensis47.4142.9184.03357forward
CNT30100563Triticum urartuOryza rufipogon37.9830.6285.66286forward

Expression of CNT30686383

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MFLTTSMPSTTSPKTTCLPSSQLQGTVQMKNWEPLVLGPALAMERIPGLVCLWTNFSSANFSP*

>peptide 2 (30 aa)
MDSPPVPLPLVKSPPWHMKSGITRWKALPL*

Sequence

>CNT30686383
ACTGAATCCAACGAGCACAAATTACGGATAATTCATAGCGGAGTTCATCTCATTCAAACGGTAAGATAGCAGCAGACACAGGAAGATAACCAAGGCCGCC
GGACGCAGATCCAGCGGCCCAAAGAGTCCACCTAAAACCCTCCTAAACCAACCACGGAGATCTCATCGGACGGACCAGGGGAAGACACGACACACGACAC
ACGACTCTCTTATTTAGATCGACGACACGACACGGGACACACGGGGCGACCGGCGGGCGGCCGGATCTAGAGCTGGCCGCAGTCGGCGATAACGACCTGC
TTGGAGCAGGTGCCGCTGCGGGAGCCCACCTTCTCGATGTTCTTGACGACGTCCATGCCCTCGACGACCTCGCCGAAGACCACGTGCTTGCCGTCGAGCC
AATTGCAGGGGACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGGATCCCGGGCTTGGTGTGCTTGTGGACGAA
CTTCTCGTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCGGTGCCGTTGCCCCTGGTGAAGTCGCCGCCCTGGCACATGAAGTCGGGGATCACGCGG
TGGAAGGCGCTGCCCTTGTAGTGCAGCGGCTTGCCGCTCTTGCCGACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCCACCGTCCGCGGCACCG
CGTCCTTGTACAGCTCCATCACGATGCGCCCCGCCGGCGCGCCGCCGACGGTC