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Detailed information on CNT30240409


BLAST search results

BLAST vs Swiss-Prot:
sp|P21568|CYPH_SOLLC, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640933Avena sativaNymphaea colorata21.320.1883.77154forward
CNT30517653Avena sativaJuglans regia33.7512.7587.3244forward
CNT30702610Avena sativaQuercus lobata26.8337.1689.18194forward
CNT30618033Avena sativaSesamum indicum26.4223.6484.29191forward
CNT3071229Avena sativaQuercus suber42.0541.1986.84304forward
CNT30632225Avena sativaVigna unguiculata32.0947.8487.07232forward
CNT30710754Avena sativaGlycine max26.6974.2390.67193forward
CNT3043301Avena sativaPrunus dulcis40.5341.0985.67293forward
CNT30167177Avena sativaPistacia vera41.6342.1683.72301forward
CNT30638631Avena sativaCapsicum annuum30.8429.5879.82223forward
CNT3090362Avena sativaSolanum tuberosum40.9462.0580.41296forward
CNT30303130Avena sativaTriticum aestivum35.9680.7588.85260forward
CNT30569495Avena sativaActinidia chinensis35.1344.8885.04254forward
CNT3084160Avena sativaVigna radiata29.3224.6889.62212forward
CNT30667711Avena sativaTriticum dicoccoides53.1156.6487.24384forward
CNT30312502Avena sativaCamelina sativa13.2827.1282.2996forward
CNT30597524Avena sativaFraxinus excelsior9.6833.0285.7170forward
CNT30140197Avena sativaLolium perenne56.9851.5691.5412forward
CNT3010238Avena sativaZea mays48.5535.5386.89351forward
CNT30653963Avena sativaRosa chinensis53.2546.2785.19385forward
CNT30128639Avena sativaCorymbia citriodora17.5725.7686.61127forward
CNT30624974Avena sativaDaucus carota40.5340.2585.67293forward
CNT30686175Avena sativaTriticum urartu50.0747.3288.12362forward
CNT30722480Avena sativaTriticum spelta26.5633.8689.06192forward
CNT30364404Avena sativaSorghum bicolor48.1349.8686.78348forward
CNT30155236Avena sativaPrunus persica40.533384.98293forward
CNT30429993Avena sativaPapaver somniferum22.1315.8780160forward
CNT30706413Avena sativaPrunus avium19.7843.3386.71143forward
CNT3022997Avena sativaPopulus trichocarpa33.4745.8379.75242forward
CNT3035490Avena sativaCucumis melo38.8757.1181.85281forward
CNT30575409Avena sativaOryza barthii22.5426.2586.5163forward
CNT30175854Avena sativaVigna angularis28.2261.0888.73204forward

Expression of CNT30240409

Peptides detected in this lncRNA

>peptide 1 (29 aa)
HDGSDKRTSQQTKAQSLELFARRIQTGKR*

>peptide 2 (30 aa)
MDSPPVPFPAVKSPPWHMNCGMTRWKVLPL*

>peptide 3 (37 aa)
MRPAAAPPIVTSKNTFGLGAISPGSEGVLVLGLIWGG*

>peptide 4 (56 aa)
TMDQTNGHLNKLRLSLLNYLLAESRQGNAEKTGKDTSDTTDPSNRLKSPRDRKRQI*

>peptide 5 (65 aa)
MTTGLEQRPLLDPTASTFLTTSSHSVLMVQRKNWEPLVPGPALAMERMPGPVCFLTKFSSANLAP*

Sequence

>CNT30240409
GCACGATGGATCAGACAAACGGACATCTCAACAAACTAAGGCTCAGTCTCTTGAATTATTTGCTCGCAGAATCCAGACAGGGAAACGCTGAGAAAACAGG
GAAAGATACATCGGACACCACAGATCCATCCAACAGGCTAAAGAGTCCCAGGGACAGGAAGCGACAGATCTAGGCGAGCTGGCCGCAGTCGGCGATGACG
ACGGGCTTGGAGCAGCGGCCGCTGCTGGATCCCACGGCCTCCACCTTCTTGACGACGTCGAGCCACTCCGTCTTGATGGTGCAGAGGAAGAACTGGGAGC
CGTTGGTGCCGGGCCCGGCGTTGGCCATGGAGAGGATGCCTGGGCCCGTGTGCTTCTTGACGAAGTTCTCGTCGGCGAACTTGGCGCCGTAGATGGACTC
GCCGCCGGTCCCGTTCCCGGCCGTGAAGTCGCCGCCCTGGCACATGAACTGCGGGATGACGCGGTGGAAGGTGCTGCCCTTGTAGTGCAGCGGCTTGCCG
CTCTTGCCGACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCGGCGGTGCGGGGCACCACGTCGGCGAACAGCTCCATCACGATGCGGCCGGCCG
CGGCGCCGCCGATCGTCACGTCGAAGAACACCTTCGGGTTGGGGGCCATCTCGCCGGGATCGGAGGGGGTACTGGTGCTTGGCTTGATTTGGGGGGGATA
AAACTAGTTTTTCTCTCTCCGGC