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Detailed information on CNT30303130


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Triticum aestivumOryza sativa21.1220.0689.7168forward
CNT30671343Triticum aestivumSetaria viridis43.1724.1790.65139forward
CNT30517653Triticum aestivumJuglans regia69.2511.6582.96223forward
CNT30702610Triticum aestivumQuercus lobata60.8737.5583.67196forward
CNT30618033Triticum aestivumSesamum indicum59.3223.6481.15191forward
CNT3071229Triticum aestivumQuercus suber79.534.6983.98256forward
CNT30632225Triticum aestivumVigna unguiculata53.4235.4684.3172forward
CNT30710754Triticum aestivumGlycine max53.4266.1585.47172forward
CNT3043301Triticum aestivumPrunus dulcis57.7626.0985.48186forward
CNT30167177Triticum aestivumPistacia vera56.5225.4982.97182forward
CNT30569495Triticum aestivumActinidia chinensis44.4125.2786.01143forward
CNT3084160Triticum aestivumVigna radiata59.6322.3585.42192forward
CNT30552830Triticum aestivumOryza glaberrima22.6719.1189.0473forward
CNT30442485Triticum aestivumAegilops tauschii81.6830.3397.72263forward
CNT30240409Triticum aestivumAvena sativa80.7535.9688.85260forward
CNT30667711Triticum aestivumTriticum dicoccoides79.8137.91100257forward
CNT30597524Triticum aestivumFraxinus excelsior14.9122.6489.5848forward
CNT30140197Triticum aestivumLolium perenne81.0632.6788.51261forward
CNT3010238Triticum aestivumZea mays81.6826.6289.35263forward
CNT30653963Triticum aestivumRosa chinensis77.9530.1784.46251forward
CNT30624974Triticum aestivumDaucus carota54.0423.987.93174forward
CNT30686383Triticum aestivumTriticum urartu85.7136.6597.83276forward
CNT30364404Triticum aestivumSorghum bicolor79.8136.8286.77257forward
CNT30155236Triticum aestivumPrunus persica57.7620.9584.41186forward
CNT30706413Triticum aestivumPrunus avium44.7243.6482.64144forward
CNT3035490Triticum aestivumCucumis melo57.7637.879.03186forward
CNT30175854Triticum aestivumVigna angularis59.6357.4985.94192forward

Expression of CNT30303130

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDSPPVPLPLVKSPPWHMKSGITRWNELPL*

>peptide 2 (58 aa)
TRHTTLLFRSTTRDTGQLQGTVQMKNWEPLVLGPALAMERIPGLVCLWTNFSSANFSP*

Sequence

>CNT30303130
ACACGACACACGACTCTCTTATTTAGATCGACGACACGGGACACGGGCCAATTGCAGGGGACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGGC
CCGCGTTGGCCATGGAGAGGATCCCGGGCTTGGTGTGCTTGTGGACGAACTTCTCGTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCGGTGCCGTT
GCCCTTGGTGAAGTCGCCGCCCTGGCACATGAAGTCGGGGATCACGCGGTGGAACGAGCTGCCCTTGTAGTGCAGTGGCTTGCCGCTCTTGCCGACGCCC
TTCTCGCCGGTGCAGAGCGCGC