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Detailed information on CNT30671343


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640933Setaria viridisNymphaea colorata31.6523.8581.87182forward
CNT30517653Setaria viridisJuglans regia37.7411.3481.11217forward
CNT30702610Setaria viridisQuercus lobata37.7441.5782.03217forward
CNT3071229Setaria viridisQuercus suber22.0917.2186.61127forward
CNT30710775Setaria viridisGlycine max37.3938.2681.86215forward
CNT30194493Setaria viridisSecale cereale29.7424.8590.64171forward
CNT30303130Setaria viridisTriticum aestivum24.1743.1790.65139forward
CNT30568322Setaria viridisActinidia chinensis22.7834.9382.44131forward
CNT30442485Setaria viridisAegilops tauschii40.8727.188.94235forward
CNT30254078Setaria viridisAvena sativa47.4843.2688.28273forward
CNT30667711Setaria viridisTriticum dicoccoides22.0918.7390.55127forward
CNT30140197Setaria viridisLolium perenne38.0927.4185.84219forward
CNT3010238Setaria viridisZea mays47.6527.7389.42274forward
CNT30653963Setaria viridisRosa chinensis37.7426.0882.95217forward
CNT30687059Setaria viridisTriticum urartu40.8733.7289.36235forward
CNT30364404Setaria viridisSorghum bicolor21.3917.6295.93123forward

Expression of CNT30671343

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDSPPNTRGFAEAMGGEAVGIEEEGFRDLLGQKEILWLWLMLWGCL

>peptide 2 (66 aa)
SIPHSSNNEQKLGGDTIPSPIGFADPPPNKTLETHHQHSTRLTTRHDAIQRSPSSYSSRAGRSLRS*

>peptide 3 (63 aa)
MALTTSRPSTTCPKTTCLPSSQGQGTVQMKNWEPLVLGPALAMESTPGPVCLRTNFSSANLAP*

Sequence

>CNT30671343
TCAGCATACCACATAGTAGTAATAACGAGCAGAAATTAGGCGGAGACACCATCCCATCACCCATTGGATTCGCAGATCCACCACCTAATAAAACCCTAGA
GACACACCACCAGCACAGCACACGATTAACGACTCGACACGACGCGATTCAGAGATCACCGTCATCTTATTCATCGCGAGCTGGCCGCAGTCTGCGATCT
TGACGGCCTTGGCGGTGGTGCCGCTGCGTGACCCGACCTTCTCGATGGCCTTGACGACGTCGAGGCCATCGACGACCTGCCCGAAGACGACGTGCTTGCC
GTCGAGCCAGGGGCAGGGCACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGCACCCCGGGTCCCGTGTGCTTG
CGCACGAACTTCTCGTCGGCGAACTTGGCGCCGTAGATGGACTCGCCGCCGAACACGCGCGGGTTCGCCGAGGCCATGGGTGGGGAGGCGGTGGGGATCG
AGGAGGAGGGGTTTAGGGATTTGTTGGGGCAGAAGGAAATCCTCTGGCTTTGGTTGATGCTGTGGGGATGTCTGT