« Back to Vigna radiata search


Detailed information on CNT3084160


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W171|CYP1_SOYBN, E-value = 9e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671041Vigna radiataSetaria viridis8.52084.9373forward
CNT30517653Vigna radiataJuglans regia34.4615.4683.78296forward
CNT30702610Vigna radiataQuercus lobata17.3528.5483.22149forward
CNT3019668Vigna radiataCitrullus lanatus10.3620.9988.7689forward
CNT3071229Vigna radiataQuercus suber25.1529.2790.28216forward
CNT30632225Vigna radiataVigna unguiculata37.9567.2295.4326forward
CNT30201798Vigna radiataPisum sativum17.4664.3884.67150forward
CNT30710754Vigna radiataGlycine max13.0443.0895.54112forward
CNT3043301Vigna radiataPrunus dulcis34.4641.5187.84296forward
CNT30167177Vigna radiataPistacia vera34.1141.0486.01293forward
CNT30638631Vigna radiataCapsicum annuum23.2826.5382200forward
CNT3090362Vigna radiataSolanum tuberosum27.4749.4884.32236forward
CNT30303130Vigna radiataTriticum aestivum22.3559.6385.42192forward
CNT30569495Vigna radiataActinidia chinensis29.5744.8885.04254forward
CNT30145071Vigna radiataMedicago truncatula17.8132.983.01153forward
CNT30442485Vigna radiataAegilops tauschii20.2620.0785.06174forward
CNT30240409Vigna radiataAvena sativa24.6829.3289.62212forward
CNT30667711Vigna radiataTriticum dicoccoides23.5229.7986.14202forward
CNT30312502Vigna radiataCamelina sativa12.1129.3881.73104forward
CNT3075586Vigna radiataBrassica juncea12.8120.7982.73110forward
CNT30597524Vigna radiataFraxinus excelsior9.0836.7984.6278forward
CNT30140197Vigna radiataLolium perenne24.4526.2886.67210forward
CNT3010238Vigna radiataZea mays24.2121.0584.13208forward
CNT30653963Vigna radiataRosa chinensis34.4635.5888.51296forward
CNT30624974Vigna radiataDaucus carota35.1641.4885.43302forward
CNT30686175Vigna radiataTriticum urartu23.426.2786.07201forward
CNT30364404Vigna radiataSorghum bicolor22.3527.5184.38192forward
CNT30155236Vigna radiataPrunus persica34.4633.3387.16296forward
CNT30706413Vigna radiataPrunus avium16.6543.3387.41143forward
CNT3022997Vigna radiataPopulus trichocarpa23.6338.4585.22203forward
CNT3035490Vigna radiataCucumis melo35.1661.3884.44302forward
CNT30100456Vigna radiataOryza rufipogon8.8523.186.8476forward
CNT30175854Vigna radiataVigna angularis23.9861.6897.57206forward
CNT30724737Vigna radiataLupinus angustifolius17.5822.3481.46151forward

Expression of CNT3084160

Peptides detected in this lncRNA

>peptide 1 (36 aa)
DDDATQIAVHQAHDEQWLTVFIIRNKEKQIERENEG*

>peptide 2 (68 aa)
MATGLEVLPELDPTFSISFTTFSPSTTCPNTTCLPSSHSVFDRCASSRSSRRRTWRRRSTRRLCRFRR*

>peptide 3 (43 aa)
MICNATIPLLDRRKKKGKIDSEKTTQIQSHQHRHNRLGSTPSI*

Sequence

>CNT3084160
TGATGATGATGCAACACAGATCGCGGTTCATCAAGCGCATGATGAACAGTGGTTAACAGTATTCATTATTAGAAACAAGGAAAAGCAGATCGAAAGAGAA
AATGAAGGATAAAATTAGGCGAATAACAAGGGTCCTAAGTTTTTATTGAAGGTAGCTCATCATTTTTATGTTTCTCATGACACACTCGAATCACTCTATG
ACCACATACTGATATTAGAAACAAAGGAAAGGATTCAAAGGGAAGGGTTCGAGATGATCTGTAACGCCACAATCCCTCTATTAGACAGGAGAAAAAAAAA
AGGAAAAATCGACAGTGAAAAAACGACACAGATTCAGAGCCACCAGCATAGACACAACCGCCTCGGGTCAACGCCGTCCATCTAGGAGAGTTGACCACAG
TCAGCGATGGCGACCGGCCTCGAGGTCTTGCCGGAGCTGGATCCGACCTTCTCGATCTCCTTCACCACGTTCAGTCCCTCAACGACCTGTCCGAACACCA
CGTGCTTGCCGTCGAGCCACTCCGTCTTCGACCGGTGTGCTTCTTCACGAAGTTCTCGTCGGCGAACTTGGCGCCGTAGATCGACTCGCCGCCTGTGCCG
TTTCCGGCGGTGAAGTCGCCTCCTTGGCACATGAAGTTCGGGATCACACGGTGGAAGATCGAGCCCTTGTAGTGGAGCGGCTTGCCGCTCCTACCGACTC
CCTTCTCACCGGTGCAGAGAGCGCGGAAGTTCTCGGCGGTGCGGGGAGTGGTGTCGGCAAAGAGCTCAAACACGATCTTGCCGGCGGGTTGGCCGCCGAT
GGTCATGTCGAAGAAGACCTTAGGGTTCGGCATAGTTGCAGAGACGGGAAATGAAGGTC