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Detailed information on CNT30312502


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42406|CP18D_ARATH, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517653Camelina sativaJuglans regia64.1211.8679.74227forward
CNT30702610Camelina sativaQuercus lobata62.4342.3481221forward
CNT30376622Camelina sativaArabidopsis thaliana70.931.4589.64251forward
CNT3019668Camelina sativaCitrullus lanatus30.2325.2485.05107forward
CNT3071229Camelina sativaQuercus suber52.2625.0781.08185forward
CNT30632225Camelina sativaVigna unguiculata29.3821.4482.69104forward
CNT30201798Camelina sativaPisum sativum20.931.7686.4974forward
CNT30507180Camelina sativaNicotiana attenuata23.4512.2490.3683forward
CNT30710754Camelina sativaGlycine max47.1864.2379.64167forward
CNT3043301Camelina sativaPrunus dulcis34.7517.2582.11123forward
CNT30167177Camelina sativaPistacia vera65.8232.6380.26233forward
CNT30638631Camelina sativaCapsicum annuum25.1411.886.5289forward
CNT3090362Camelina sativaSolanum tuberosum61.8645.9182.19219forward
CNT3084160Camelina sativaVigna radiata29.3812.1181.73104forward
CNT30145071Camelina sativaMedicago truncatula25.1419.1484.2789forward
CNT30240409Camelina sativaAvena sativa27.1213.2882.2996forward
CNT30613544Camelina sativaArabis alpina70.943.7381.67251forward
CNT30140197Camelina sativaLolium perenne29.3813.0283.65104forward
CNT30653963Camelina sativaRosa chinensis64.1227.2881.5227forward
CNT30155236Camelina sativaPrunus persica34.7513.8582.11123forward
CNT30429993Camelina sativaPapaver somniferum69.4924.481.3246forward
CNT30706413Camelina sativaPrunus avium34.7537.2785.37123forward
CNT3022997Camelina sativaPopulus trichocarpa54.836.7479.9194forward
CNT3035490Camelina sativaCucumis melo36.1626.0282.03128forward
CNT30724737Camelina sativaLupinus angustifolius25.4213.3186.6790forward

Expression of CNT30312502

Peptides detected in this lncRNA

>peptide 1 (47 aa)
PLFISLFSYTLSRSKADQSSQQPHASRSFQNQIQTFNDLTKHNVLPI*

>peptide 2 (39 aa)
MFLDKVLVFELSSVDRFTTGSIPGCEITSLAHEPRNHTVK

Sequence

>CNT30312502
CACCATTATTCATAAGTCTCTTCTCTTACACACTCTCCAGATCTAAAGCTGACCAGAGTTCTCAACAACCACACGCTTCGAGGTCCTTCCAGAATCAGAT
CCAAACCTTCAACGACTTGACCAAACACAACGTGCTTCCCATCTAGCCACGAGGTTTTAGCAGTACAGATAAAGAACTGAGATCCGTTAGTGTTGGGACC
AGAGTTAGCCATGGAGAGTATCCCAGCTCCGGTATGTTTCTTGACAAAGTTCTCGTCTTTGAACTTAGCTCCGTAGATCGATTCACCACCGGTTCCATTC
CCGGCTGTGAAATCACCTCCTTGGCACATGAACCCAGGAATCACACGGTGAAAG