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Detailed information on CNT30100563


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Oryza rufipogonOryza sativa25.5970.5100239forward
CNT30671097Oryza rufipogonSetaria viridis22.2745.1287.02208forward
CNT30710775Oryza rufipogonGlycine max30.9451.4280.97289forward
CNT30194493Oryza rufipogonSecale cereale22.5930.6788.63211forward
CNT30301234Oryza rufipogonTriticum aestivum7.7122.1598.6172forward
CNT30568322Oryza rufipogonActinidia chinensis16.741.682.05156forward
CNT30552830Oryza rufipogonOryza glaberrima30.374.08100283forward
CNT30442485Oryza rufipogonAegilops tauschii31.3733.7985.32293forward
CNT30254078Oryza rufipogonAvena sativa36.7254.3687.46343forward
CNT30667711Oryza rufipogonTriticum dicoccoides17.1323.691.88160forward
CNT30140197Oryza rufipogonLolium perenne22.8126.6681.69213forward
CNT3010238Oryza rufipogonZea mays32.3330.5783.11302forward
CNT30653963Oryza rufipogonRosa chinensis30.9434.7478.55289forward
CNT30128639Oryza rufipogonCorymbia citriodora13.3825.3587.2125forward
CNT30624974Oryza rufipogonDaucus carota16.3821.0282.35153forward
CNT30686383Oryza rufipogonTriticum urartu30.6237.9885.66286forward
CNT30722480Oryza rufipogonTriticum spelta17.1328.2291.88160forward
CNT30364838Oryza rufipogonSorghum bicolor16.2730.3488.82152forward
CNT30369645Oryza rufipogonOryza glumipatula41.4376.3399.22387forward
CNT30575409Oryza rufipogonOryza barthii38.4457.81100359forward
CNT30175854Oryza rufipogonVigna angularis7.621.2690.1471forward
CNT30550616Oryza rufipogonOryza brachyantha17.7727.7690.96166forward

Expression of CNT30100563

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGDLISPTRHELIKRLTPPPPPPYLGTRRLKTTDTGERRRGTAQI*

>peptide 2 (52 aa)
HEDSLIYFNRKNVSTVARTNNHTGVRSQKIHGSQMFSLIDSDIIEAATRIKI*

>peptide 3 (29 aa)
MSKNTLVFDIAAALGFCEFHRWGIFFLFV*

>peptide 4 (79 aa)
MTTGLAVLPPRDPTFSMALTTSMPSTTRPNTTCFPSSQLQGTVQMKNWDPLVLGPAFAMDRMPGLSCLNLNTSSANFSP*

Sequence

>CNT30100563
CTCACGAAGATAGTTTAATCTACTTTAATCGCAAGAACGTTAGTACTGTCGCAAGAACAAACAACCACACAGGTGTAAGATCACAGAAAATCCACGGATC
CCAAATGTTCTCATTGATTGATAGCGATATCATAGAAGCAGCGACACGAATTAAGATTTAAAACCAACCCCAAGAAGGATCGCAGATCCAACTCCACCGA
ATCGATCCAAGAACTCCGCCTAATCCAACCAAACCATGGGCGATCTCATCTCACCAACACGACACGAACTCATAAAAAGACTAACACCACCACCACCTCC
TCCTTATTTAGGGACTCGACGACTCAAGACGACTGATACTGGCGAAAGGCGAAGGGGAACAGCACAGATCTAGGAGAGCTGGCCGCAGTCGGCGATGACG
ACCGGCTTGGCGGTGCTCCCGCCGCGGGATCCCACCTTCTCGATGGCCTTGACGACGTCCATGCCCTCGACGACGCGGCCGAACACGACGTGCTTCCCGT
CCAGCCAGCTGCAGGGCACGGTGCAGATGAAGAACTGGGACCCGTTAGTGTTGGGCCCGGCGTTCGCCATGGACAGGATGCCGGGGCTGTCGTGCTTGAA
CTTGAACACCTCGTCGGCGAACTTCTCGCCGTAGATCGACTCCCCTCCCGTGCCGTTGCCGCGGGTGCTCCCCTTGTAGTGCAGCGGCTTGCCGCTCTTG
CCCACGCCCTTCTCGCCGGTGCAGAGCGCGCGGAAGTTCTCCGCCGTCCGCGGCACGTCCTTCGCGTACAGCTCCATCACGATCCGCCCCGCCGGAGCTC
CGCCGACGGTCATGTCGAAGAACACCCTCGTGTTCGACATCGCCGCCGCGCTAGGGTTTTGCGAATTTCACAGATGGGGAATATTTTTTCTTTTTGTTTG
ATTTTTTTTGCTGTTTCACTTCAGATCGCTGCGT