« Back to Solanum tuberosum search


Detailed information on CNT3090362


BLAST search results

BLAST vs Swiss-Prot:
sp|P21568|CYPH_SOLLC, E-value = 9e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517653Solanum tuberosumJuglans regia50.3112.5485.83240forward
CNT30702610Solanum tuberosumQuercus lobata46.5442.5388.74222forward
CNT30376622Solanum tuberosumArabidopsis thaliana66.0439.4782.22315forward
CNT30618033Solanum tuberosumSesamum indicum29.3517.3383.57140forward
CNT3019668Solanum tuberosumCitrullus lanatus24.9528.0785.71119forward
CNT3071229Solanum tuberosumQuercus suber50.132.3888.28239forward
CNT30632225Solanum tuberosumVigna unguiculata53.0452.1681.42253forward
CNT30201798Solanum tuberosumPisum sativum12.3725.3289.8359forward
CNT30506710Solanum tuberosumNicotiana attenuata15.7227.0897.3375forward
CNT30710754Solanum tuberosumGlycine max42.1477.3185.57201forward
CNT3043301Solanum tuberosumPrunus dulcis50.133.5284.52239forward
CNT30167177Solanum tuberosumPistacia vera50.3133.6185240forward
CNT30569495Solanum tuberosumActinidia chinensis46.9639.5882.59224forward
CNT3084160Solanum tuberosumVigna radiata49.4827.4784.32236forward
CNT30240409Solanum tuberosumAvena sativa62.0540.9480.41296forward
CNT30312502Solanum tuberosumCamelina sativa45.9161.8682.19219forward
CNT30140197Solanum tuberosumLolium perenne65.4139.0581.73312forward
CNT3010238Solanum tuberosumZea mays21.5910.4383.5103forward
CNT30653963Solanum tuberosumRosa chinensis50.3128.8587.5240forward
CNT30624974Solanum tuberosumDaucus carota50.132.8381.17239forward
CNT30364404Solanum tuberosumSorghum bicolor27.0418.4881.4129forward
CNT30155236Solanum tuberosumPrunus persica50.126.9184.1239forward
CNT30429993Solanum tuberosumPapaver somniferum40.8819.3582.56195forward
CNT30706413Solanum tuberosumPrunus avium30.443.9488.28145forward
CNT3022997Solanum tuberosumPopulus trichocarpa54.5149.2480260forward
CNT3035490Solanum tuberosumCucumis melo26.2125.4184.8125forward
CNT30175854Solanum tuberosumVigna angularis42.3560.4883.17202forward
CNT30724737Solanum tuberosumLupinus angustifolius31.2422.0483.89149forward

Expression of CNT3090362

Peptides detected in this lncRNA

>peptide 1 (75 aa)
VLSIEPLSLSGTDEELRTVGSRSSISHGENSSAGVLLHEVLVLEFGAVDRLSSGTVSGGEITSLTHEPWDHTVEG*

Sequence

>CNT3090362
GTGCTTTCCATCGAGCCACTCAGTCTTAGCGGTACAGATGAAGAACTGAGAACCGTTGGTTCCAGGTCCAGCATTAGCCATGGAGAGAATTCCAGTGCCG
GTGTGCTTCTTCACGAAGTTCTCGTCCTTGAATTTGGCGCCGTAGATCGACTCTCCTCCGGTACCGTTTCCGGCGGTGAAATCACCTCCTTGACACATGA
ACCCTGGGATCACACGGTGGAAGGTTGAGCCCTTGTAGTGCAAAGGCTTACCCATCTTTCCAACACCTTTTTCACCGGTACAGAGAGCTCGGAAGTTCTC
AGCGGTTTTGGGAGTGGTATCGGCGAAGAGCTCCATCACCACGCGGCCAGCTGGTGCACCGCCGATGGGTTTAAGCGAGACAGAATATTATATAGGAAGA
TGTGAAAGCGGATAATTTATGGAAAAATAATCACCACCGTTTGATCGGACAGGTGTCAGGATCTTGGAGAGTCTGGC