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Detailed information on CNT30140197


BLAST search results

BLAST vs Swiss-Prot:
sp|P21568|CYPH_SOLLC, E-value = 7e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691021Lolium perenneOryza sativa16.7739.5384.33134forward
CNT30671343Lolium perenneSetaria viridis27.4138.0985.84219forward
CNT30640933Lolium perenneNymphaea colorata27.9129.2385.65223forward
CNT30517653Lolium perenneJuglans regia29.1612.1789.27233forward
CNT30702610Lolium perenneQuercus lobata35.6754.687.37285forward
CNT30618033Lolium perenneSesamum indicum28.0427.7281.25224forward
CNT3071229Lolium perenneQuercus suber42.345.886.09338forward
CNT30632225Lolium perenneVigna unguiculata28.2946.684.96226forward
CNT30201798Lolium perennePisum sativum8.7630.0485.7170forward
CNT30506710Lolium perenneNicotiana attenuata8.8925.6385.9271forward
CNT30710754Lolium perenneGlycine max30.1692.6988.38241forward
CNT3043301Lolium perennePrunus dulcis37.0541.5183.11296forward
CNT30167177Lolium perennePistacia vera38.843.4284.52310forward
CNT30638631Lolium perenneCapsicum annuum32.1734.0880.16257forward
CNT3090362Lolium perenneSolanum tuberosum39.0565.4181.73312forward
CNT30194493Lolium perenneSecale cereale26.1630.3885.17209forward
CNT30303130Lolium perenneTriticum aestivum32.6781.0688.51261forward
CNT30569495Lolium perenneActinidia chinensis31.7944.8884.25254forward
CNT3084160Lolium perenneVigna radiata26.2824.4586.67210forward
CNT30442485Lolium perenneAegilops tauschii49.5645.6785.61396forward
CNT30240409Lolium perenneAvena sativa51.5656.9891.5412forward
CNT30667711Lolium perenneTriticum dicoccoides47.6856.1986.61381forward
CNT30312502Lolium perenneCamelina sativa13.0229.3883.65104forward
CNT30597524Lolium perenneFraxinus excelsior8.5132.0886.7668forward
CNT3010238Lolium perenneZea mays55.0744.5388.41440forward
CNT30653963Lolium perenneRosa chinensis56.9554.6984.4455forward
CNT30128639Lolium perenneCorymbia citriodora17.6528.685.82141forward
CNT30624974Lolium perenneDaucus carota37.841.4882.12302forward
CNT30686383Lolium perenneTriticum urartu60.764.4185.77485forward
CNT30722480Lolium perenneTriticum spelta23.6533.3386.77189forward
CNT30364404Lolium perenneSorghum bicolor43.9350.2985.47351forward
CNT30369645Lolium perenneOryza glumipatula15.0223.6785120forward
CNT30155236Lolium perennePrunus persica37.0533.3382.43296forward
CNT30706413Lolium perennePrunus avium15.6437.8887.2125forward
CNT3022997Lolium perennePopulus trichocarpa16.925.5782.22135forward
CNT3035490Lolium perenneCucumis melo35.5457.7279.23284forward
CNT30100563Lolium perenneOryza rufipogon26.6622.8181.69213forward
CNT30575409Lolium perenneOryza barthii19.6525.2885.35157forward
CNT30175854Lolium perenneVigna angularis25.2860.4885.64202forward

Expression of CNT30140197

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRPAGAPPIVTSKKTLGLPISPESEGGVGAA

>peptide 2 (34 aa)
MEIYLIGRTQARHDTRRILFQHDDTKTQGDSTTN*

>peptide 3 (79 aa)
MTTGLEQLPLWDPTFSMAWTTSMPSQTCPKTTCLPSSQAVLAVQRKNWEPLVPGPALAMERTPGPVCFLTKFSSLNLAP*

>peptide 4 (30 aa)
MDSPPVPFPAVKSPPWHMKPGMTRWNLLPL*

Sequence

>CNT30140197
GCGAAAATTCATTGATTGATTCATTCTCATACTAGTCATAGAAAGGGTAACATAGCAGCAGATCTAGCAGCGACACGACAGAGTTCACCTGAAACCATCC
TAAACCAACCATGGAGATCTATCTCATCGGACGGACACAAGCGAGACACGACACGAGACGGATCTTATTTCAGCACGACGACACGAAGACACAGGGAGAC
TCGACGACAAATTAATGTTGTACGAATTGCAGGCCGGACGGCATCAGATCTAGAGCTGTCCGCAGTCGGCGATGACGACGGGCTTGGAGCAGTTGCCGCT
CTGGGATCCGACCTTCTCGATGGCCTGGACGACGTCCATGCCGTCGCAGACCTGTCCGAAGACGACGTGCTTGCCGTCGAGCCAGGCGGTCTTGGCGGTG
CAGAGGAAGAACTGGGAGCCGTTGGTGCCGGGGCCGGCGTTGGCCATGGAGAGGACGCCGGGGCCGGTGTGCTTCTTGACGAAGTTCTCGTCCTTGAACT
TGGCGCCGTAGATGGACTCGCCGCCGGTGCCGTTCCCGGCGGTGAAGTCGCCGCCCTGGCACATGAAGCCCGGGATGACGCGGTGGAACTTGCTGCCCTT
GTAGTGCAGCGGCTTGCCCATCTTGCCGACGCCCTTCTCGCCCGTGCAGAGCGCGCGGAAGTTCTCCGCGGTGTTGGGCACCACGTCGGCGTACAGCTCC
ATCACGATGCGGCCCGCCGGGGCGCCGCCGATCGTCACGTCGAAGAAGACCTTGGGGTTGCCCATCTCGCCGGAATCGGAGGGAGGTGTTGGTGCTGCT