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Detailed information on CNT3071229


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39613|CYPH_CATRO, E-value = 5e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671343Quercus suberSetaria viridis17.2122.0986.61127forward
CNT30640933Quercus suberNymphaea colorata27.6426.7484.8204forward
CNT30517653Quercus suberJuglans regia35.6413.7489.73263forward
CNT30702610Quercus suberQuercus lobata36.0450.9696.62266forward
CNT30618033Quercus suberSesamum indicum39.736.2680.55293forward
CNT3019668Quercus suberCitrullus lanatus15.7227.3686.21116forward
CNT30632225Quercus suberVigna unguiculata31.7148.2588.46234forward
CNT30201798Quercus suberPisum sativum9.4930.0491.4370forward
CNT30507180Quercus suberNicotiana attenuata27.5129.9482.76203forward
CNT30710754Quercus suberGlycine max32.3891.9293.72239forward
CNT3043301Quercus suberPrunus dulcis29.1330.1591.63215forward
CNT30167177Quercus suberPistacia vera47.1548.7488.51348forward
CNT30638631Quercus suberCapsicum annuum28.3227.7281.34209forward
CNT3090362Quercus suberSolanum tuberosum32.3850.188.28239forward
CNT30303130Quercus suberTriticum aestivum34.6979.583.98256forward
CNT30568322Quercus suberActinidia chinensis19.1137.688.65141forward
CNT3084160Quercus suberVigna radiata29.2725.1590.28216forward
CNT30145071Quercus suberMedicago truncatula23.5837.4283.91174forward
CNT30442485Quercus suberAegilops tauschii39.5733.6883.56292forward
CNT30240409Quercus suberAvena sativa41.1942.0586.84304forward
CNT30667711Quercus suberTriticum dicoccoides36.1839.3883.9267forward
CNT30312502Quercus suberCamelina sativa25.0752.2681.08185forward
CNT3075586Quercus suberBrassica juncea14.9120.7985.45110forward
CNT30597524Quercus suberFraxinus excelsior11.2539.1587.9583forward
CNT30140197Quercus suberLolium perenne45.842.386.09338forward
CNT3010238Quercus suberZea mays45.834.2184.62338forward
CNT30653963Quercus suberRosa chinensis45.840.6293.79338forward
CNT30624974Quercus suberDaucus carota30.3530.7785.27224forward
CNT30686383Quercus suberTriticum urartu45.9345.0283.78339forward
CNT30364404Quercus suberSorghum bicolor36.9939.1183.15273forward
CNT30155236Quercus suberPrunus persica29.1324.2191.63215forward
CNT30429993Quercus suberPapaver somniferum25.0718.3580.54185forward
CNT30706413Quercus suberPrunus avium19.3843.3392.31143forward
CNT3022997Quercus suberPopulus trichocarpa25.4735.6184.04188forward
CNT3035490Quercus suberCucumis melo28.7343.0985.38212forward
CNT30100456Quercus suberOryza rufipogon10.323.189.4776forward
CNT30175854Quercus suberVigna angularis27.7861.3888.29205forward
CNT30724737Quercus suberLupinus angustifolius20.3322.1986.67150forward

Expression of CNT3071229

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPSTIWPNTTSMPSTIWPNTTCFPSSHSVLAVQMKNCDPLVPGPALAMERIPGPVCFFTKFSSANLAP*

Sequence

>CNT3071229
ATCATATAATATATAAAAAGGTTTCAGAACCACCATATCATCAAAGGATAGGATTTTAAAAACCCAGTTCTCATAGACTCCCAAAAAAAAAAAAAAAAAG
AGAGAGAAAAACCATAAGCACAACCCCTAAAACGACACCGACACTGAAAGATAAAAAACTAAAGAAGCCAGTAATAAACGACACCCCAATAGGTGAAAAC
GACAGAGATAGAGATAATCTTATTAGAGATAGTTAAAATCAGGTTTTTGCTGTTGTTGACTTTTTCAGATCTAAGAGAGTTGACCACAGTCAGCGACGAC
CACAGGCTTCGAGGTCCTTCCGGAGCTCGATCCGACCTTCTCCACGGCCTTCACGACGTCCATGCCCTCGACGATCTGGCCGAACACGACGTCCATGCCC
TCGACGATCTGGCCGAACACGACATGCTTTCCGTCGAGCCACTCGGTCTTGGCGGTGCAGATGAAGAACTGTGATCCGTTGGTTCCGGGACCGGCATTGG
CCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCGTCGGCGAACTTGGCGCCGTAGATCGACTCGCCTCCGGTGCCGTTTCCGGCGGT
GAAGTCGCCTCCCTGGCACATGAACCCAGGGATCACACGGTGGAACGACGATCCCTTGTAGTGGAGCGGCTTGCCGGAGCGGCCGGCGCCCTTCTCGCCG
GTGCAGAGAGCTCGGAAGTTCTCGGCCGTGCGGGGAAC